DreEX0080081 @ danRer10

Exon Skipping

Gene

ENSDARG00000021948 | tnc

Description

tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]

Coordinates

chr5:28002894-28025364:-

Coord C1 exon

chr5:28025155-28025364

Coord A exon

chr5:28006231-28006763

Coord C2 exon

chr5:28002894-28004486

Length

533 bp

Sequences

Splice sites

3' ss Seq

TAATTTCATTTTTTTTTCAGGAT

3' ss Score

9.31

5' ss Seq

CAGGTGAGC

5' ss Score

9.6

Exon sequences

Seq C1 exon

AGCATCAGCAGACAGACACAGGCTGGATGGAGCACTCTCACTGAGAGCAGAGAGAGACAGGAGGGAATGACAGGACTGTCATCTGTCTAAAGAAAATTAAGAAGCACTTCAAGAGTCCCTGATGTTTTCAGCCCTTCGTTTGCCGTCACATTGCAGGTCCTAGACAGAGGCACGTCTCTGAGCCTGTAGAGGAGGACTGCTCACACTAAG

Seq A exon

GATAAATCCTACATTCAGTATATTATCCACACCCGTGAGGAGTGTCCCGTGAGATCCTCTCATCATGGGGATGCGAGGCCTGCTGCTGGCCTCTATGGCAGTGGCTGTTTTAGTTCATCTGTCTAGTGCTGGCCTGGTGAAAAGAGTAATTAGACACAGAAGAGAATCCCTCTCACCAACCACTGAGAACTTGACCCTGCCGAGCCCTGATCAGCCTGTGGTCTTCAACCATGTGTACAACATCAACGTCCCCTCCGGGTCCCTGTGCTCTGTGGACATGGATTCACCCGGAACAACAGAAATTAAGCCCAAGTCGGAGCAATCTGACCAGCACATAGAACACACCACAGACGGAGAGAATCAGATTGTTTTTACTCATAGGATTAATATTCCCAAGCAAGCTTGCGGTTGTGATAACCACATGCCGGATATGAAGGAGCTTCTGAATAGGCTGGAAATGCTGGAGGCAGAGGTTTCCAGTTTAAGAGAGCAGTGCACCAGTGGGGCCGGCTGCTGTTCTGCTCAGGTTACAG

Seq C2 exon

GTGAAGTCACAACCAAACCCTACTGCAGTGGCCGGGGCAACTACAGCACTGACACCTGCAGCTGTGTGTGTGAACCCGGGTGGAAGGGAGTCAACTGCTCTGAGCCAGAATGCCCAAACTACTGCCAGGATCAAGGGCGTTGTGAGGATGGCAAGTGTGTCTGCTTCGAGGGCTTCGGTGGTGAGGATTGTGGCATCGAGCTGTGCCCTGTGGATTGCGGTGAGAATGGAGAGTGTATCGACGGGGCTTGTATCTGCGCTGAAGGCTTCATTGGTGAGGATTGTAGTTTAAGCAACTGCCCAAGCAACTGCCTCGGCAGGGGGCGCTGTGTGGATGACGAATGTGTATGTGACGAGCCTTGGACAGGGTTTGACTGCTCCGAGCTTATATGTCCCAACGACTGCTTCGACCGAGGCCGCTGCGAGAATGGAACCTGCTATTGCGATGAGGGCTTTACTGGGGAAGACTGCGGGGAGCTTACCTGCCCCCAAAACTGCAAC

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000021948-'0-3,'0-1,1-3

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref, Alt. ATG (>10 exons))

No structure available

Features

Disorder rate (Iupred):

C1=NA A=0.338 C2=0.000

Domain overlap (PFAM):

C1:

NA

A:

PF152461=NCKAP5=PU(74.1=52.9)

C2:

PF152461=NCKAP5=PD(25.0=5.3),PF126612=hEGF=WD(100=2.4),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF126612=hEGF=WD(100=2.4),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1),PF079748=EGF_2=WD(100=5.1)

Main Inclusion Isoform:

ENSDARP00000114191