DreALTD0003112-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000061736 | ank3a
Description
ankyrin 3a [Source:ZFIN;Acc:ZDB-GENE-060621-1]
Coordinates
chr17:20691426-20696761:-
Coord C1 exon
chr17:20696681-20696761
Coord A exon
NA
Coord C2 exon
chr17:20691426-20691516
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACA
5' ss Score
4.87
3' ss Seq
GATCTGCTCGCTCTCCGCAGGCT
3' ss Score
10.85
Exon sequences
Seq C1 exon
CGGATGCACTGACAGCGGTCCTGACTAAAGTGAACCGGATGGATATTGTGACTCTGCTGGAAGGGCCCATATTTGACTATG
Seq A exon
NA
Seq C2 exon
GCTGGTTCTCTGAGACATCCAATGCCAATGCAGAGCCAGCTGCTTCGGGACGGGGTCACGGCTCAGACCACATGGACAAACTAGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061736-55-59,56-59-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.843
Domain overlap (PFAM):
C1:
PF0053117=Death=PD(27.7=82.1)
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACAGCGGTCCTGACTAA
R:
CATGTGGTCTGAGCCGTGAC
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]