DreINT0029752 @ danRer10
Intron Retention
Gene
ENSDARG00000061736 | ank3a
Description
ankyrin 3a [Source:ZFIN;Acc:ZDB-GENE-060621-1]
Coordinates
chr17:20691426-20696761:-
Coord C1 exon
chr17:20696681-20696761
Coord A exon
chr17:20691517-20696680
Coord C2 exon
chr17:20691426-20691516
Length
5164 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACA
5' ss Score
4.87
3' ss Seq
GATCTGCTCGCTCTCCGCAGGCT
3' ss Score
10.85
Exon sequences
Seq C1 exon
CGGATGCACTGACAGCGGTCCTGACTAAAGTGAACCGGATGGATATTGTGACTCTGCTGGAAGGGCCCATATTTGACTATG
Seq A exon
GTAACATTTCAGGCACCAGAAGTTTTGCAGATGATAGCGCTGTGTGCCAGGAAAAGGCGGATGGTAAAGTTTAGCCCCATCTAGCTGAACCCCCCACCCAAACCTCGCCCTCTCCTCCCCAACTCATTCCTTTTTTTTGTTTTCCTCTACAACCTCCCTGCAGTTTGCCAAAGTGTTAATCACAGGTGGACTATTAATAGTTTTTTTTTTGTTTACTTGAAATCTACATCCAAACATTGCCTTTGGCACATTTATAGAACATCAGATCCTTTTCTGAGGCCCTGTTTACATCCATGTCGTGTTAAATCACTCACTACTTGTTTTAAAATTTTGATTTTAAAGACTTTCTTTATTCAGAGACTCTTCATTTCTGTTACCCCCTTCCCTTCCTCCCAACACCATATGCATGGACCTGGTTTGAACATGCATGTATATGGTCATGTGATGTGAAGCAATCACAGCATGATGCTTTGCCTCAACAAGTGTAGGAAGGGCCGCTCAAAACAATATTTTCCTGTTACACATGTACACACTTTTCTTTTTATTTTCTTTAAATTAAGGCCCTACAGCAAGGGTGGGCAAACTCGGTCCTGGAGGGCCAGTGTCCTGCAGACTTTAGCTCCAACACTAATCAAACACACCTGAACATGCTAATCAGTGTCTTCATGATCAATAGAAATCTATAAGTAGGTGTGTTTGAGTAGAGCTGGAGCTAAACTGTGCAGGACACCGGCCCTCCAGGACAGAGTTTGCCCACCCCTGCCCTACAGTATACTGCCAATGGAACAAGAAACAAGTACCGTTTTTAGCCATAACCTTAGTTCTGTTGTACAAAGGGCAGGAAAGACTTACTTTTTGTAAACCAAATGCATGTTATTATCAGCTGTATCCTAACTAAGCTGTTGTGATATAAGTTGGCAGGAGTGTTACAGACCAGCTCTTTTTTAAGTAGTGGACCACAGCGCATGGCATCAGCTAAAAGACTCAGCTGTCCTCTGCCTCTCAAGCTGTCGATCTGCTTCCTCCTCCATCTACCCTTCTCTCCTCTCCTCCCCTTGACTGAAGCAAGGGATAAAAAGAGAGAGGGGGGAAAAGAAGAGAAAGAAGGAGATCATCCTTCTCTCCATAGTCTCCTCCTCCTGACAGTCTCCTGTGCCTCCCTCTGTCAGCTACAAAGTGACTTGTCCTCTCCTCTCCTCCAGTACAACCCCCTATTTCCCACCTCCCAGACTCCATTCATTCTTCACATTCACACAGTCATGTATTTCTAACTTGCATGTTCTCTTTGTGTTTTTGTCCCCTATTTTCGGCTCGCATTTCCAATGATGTGGCCCAAGACTCTCCATCCAGTTATTCTCAGTTCCCATCTGCTCCACTTAAATCTTCCTTCTCTCTCTCCTCTCTCTCTCTTTCTCCTGTTCTTAACCTGTCAACTCCCATTTCTGCACGTAGAATTTGTCTCTCTCCCTCGCACTGCCCTTCCCCTCTGTCCTCTATCTCTCCCTGTTCATCCCATTGTATGAGTCTTGTCTCCTCCTCACCACCGCCCTCACCGTTGCCCCCTTGTGCTTGCTGTCACTGCCCCTGCATCCCCCCCGGACCACCCCTGGCTACTCCATCCCTCTGTCACAACTCCTCCTCTATTGAACTTTTCATCTGAACAGACATTGTTCTTCTCATTTTCATTTTGCCAGATTTTGAGTCTCCCCATATTGAGTAGCAACACATTCTTGACAGTGATTTATAAAAAAACTATTTGTGTTTGCACATATTGCATACATGTACAGTAATTGCATCCGACTAACAGAAGTAACATGCGGTTTTTATTATAGACTGCCAACTTTTTAATCAAAGTTACAGATGAATATACACGGCAGTTTTACTATGGGGAGGTAAAATTTAAACACTCTACCTATCAGAAGTTTGAGCTCAGTAAGAATAAATTACAGGGCATCCGGAAAGTATTCATAGCGCTTCACTTTTTCCACATTTTTTTATGTTACAGCCTTATTCCAAAATGGATTAAACTCATTTATTTCCTCAAAATTCTACACACAGTAGCCCATAATGACAATGTGAAAAAAGGTTTTTTGAAATTGTTGCAAAATTATTAAAAATAAAAAAACCTGAAAAATAGCATGTACATAAGTAATCACAGCCTTTGCCCAATACTTTGTTGATGCACCTTTTTAAATATGATGCCACTAGCTTGGCACATATCTCTTTGGGACTTTTGCCCATTCCTCTTTGCAGTACCTCTCAAGCACTATCAAGTTGGATGGGAAGCGGCGGTGTACAGCCATTTTCAGATCTCTCTAGAGATGTTTAATAGGATTTAGGTCTGGGCTCTGGTTGGGCCACTCAAGGACATTCACCAAGTTGTTGTGAATCCACTCCATTGATATTTTGCCGATGTGCTTTGGGTCATTGTCCTACTGGAAGATCAGACTGTCTCCCCAGTCTGAGGTCAAGAGCACTTTGAAGCAGGTTTTCATTGAGCTGCATTCATCTTTCCCTCTATCCTGACTAGTCTTCCAGTTTCTGTTGCTGAAAAACATCCCCACAGCATGATGCTGCCACCACCATGCTGGCACACTGGATGGTACACTGTAAAAAATGCAGGGTTCCACATAATTCATTCATGTTGACCCAACACAAATCGATTAAGTTAACCTAACACTTTTAACAAATATATATGGATTGAACATAAACAAATAAGTTGTCATAATGAAATCTCAAAAATTGTGTTGTTTCGGCTCATTTTACATAAGTAATTTGAACAAGCAAAAGTGTATTAGCGTGGTGATGAGCGGTGCCTGGTTATCTCCAAACGTAATGCCTGGCATTTACTCCAAAAAGTTTAATTTTAGTCTCATCAGACCAGAGTATTTTGTATCGTATGGTCTGAGAGTCCTTCAGATGCCATTTGGCAAATTCCAGGTGGGGAGTGGTCTCCGTCTGGCCACTCTATCATACAGGTCTGATTGATGGATTGCTGCACAGATGGATGTCCTTCTGTTAGGTTCTCCTCTCCCCACAGAAGAACACTGCAACTCAGACAGAATGACCATCGGGTTATTCATCACCTCCCTGACTAAGACCCTTCTCCTCCGATCACTCAGCTTAGATGGCCAGCCAGCTTTAGGAAGAGTCCTGGTGGTTCTAAACATCTTCCACTTACAGGTGATGGAGGCCACTGTGCTTATTGGAACTTTCATAGCAGCAGAAATTTTTCTGCAACCTTCCCCAGCCTTGTGCCTCGAGACAATTCTGTCTCGGAGGTCTACAGACAATTCCTTTGTCTTCATACTTGGTTTGAACTTTGACATGCACTGTCAACCCTGGGACCTTATATAGACAGTTGTATGCATTTTCAAATCATGTCCAATAAACTGAATTTACCACAGGTGAACTCCACTGAAGCTGCTGAAACATCTCAAGAATGATCAGTGGAAACAAAATGTACCTAAGTTCAATTTAGAGCTTCACTAAAAAGCTGTGAATAGTTATGTGCATATGATTTTTCAGGTTTTTTGTTTTTAATAAGTTCGCAACAATTTCATTTTATCACATTGTCATTATGGGGTATTTTGTGTAGAATTTTGAGGAAATAAATTAATTAAGTCCATTTTAGAATGAGGCTGTAACATAAAAAAATGTGGAAAAAGTTAAGCGCTGTGAAGACCTTCCAGATGCATTTTTGATCAAAAACATTTGTAGTAAAAAACTGTCATTGTTTTTTATGAATAGTATGACACTTTGTGTATAAGGTGATTTAACTGTTTCTTTAAATTAAACGCGTTCTTGCTAAAAAAAAACAACTTTTGAATTAAGAAATTACAACAGATGTTTTGGAGATCTGCATCTGTTCCATTGTCATTGTGTATTAACTGTGTGCTTGTTGGCATGTATGTCTGGTGAATCTTTGGGAAATACGGTCTAATACTTTTGCTCTTCATGGTGGGCTTAGGTGTCTATCTCTGTGTTCAAATCAATAGTTCACCCCAAAATTTAAATGTTATCATTTACTCACTCTTATGTTGTATCGACCAGTTGTTGCATGGAAAACCTTTTGTAAGAATTCTTCAAAATAACACAATATTGGTTTGAAACAACATGAGAGTGAGCAAATTATACACATTTTAACAGATTTTTCAAACAATTTTCTGGTGAACTGTTCTTTTAAGCATGTTTATGTGTGTGCTTGTGTGTGTGATTGTAATTGTGTCCTGTCATGTCCATCCATCTGTGTGTGTATCATCTCACCCAGGTTTCCACACCATCCTGGCTCAACTGCAGTCAACTACCAACCCCACCCCCACCACACCCCCTATCTGCCCCTCTGTGTCTGATGACATCGAGCCCATCTTAGATCTACCCCTTGACCCTCCCCCTTATTGCCCCTCTTGGGGTCTAGAGCGGTACAGCGTGGATGAATCTATCAGAATCACCCCATCTAGACCCTGCGACCTGCTCCTGTCTAAACCTGTAAATCAGACACTCACTGAAACAACTGCCCAAATACACACACAAATTGATCCTCAAATACACACTCAGCTCCCATCTGACAATACCAAACACACAACACAACTCACATGTGACACTGACTCACAGCTTCCACCACTACAGCATGACGAACCACCTCTAAACTCTTCTGAAACACTTCAGTCTGTCCCCAAAACAGACCCACCCTGTTTGAATACACAGGACCACCTTGTACAGGCCAATCAAGGGTCTCAAGACAAGGAATCAAGTGAGAAAAAAGGGTCTTTTCACTTCCAACAGAATTTGTCCCCTCCTATGGAACCGAATGAAATAGAAGAGCATAAGAGTCCTTCATCATCATCACTATCATCACCATTTGAAGAAACAAATATTATCCTGAAGGGAGAGGAGAACGTCAACCCTAAAGTGGTTCAAGGTCATGAGGATTCCCCTTTGCGACCCTGGGTAGAGGTCCTGAGGGAGTCTGTCTCAGGAGGAGAGGAGGAGGAGGAGGAAGAGGAGAAGGAAGCCCAGGAGAGACAAGAGCAACTCAAAGAGTCAGATGGCCATGGCCAAGTGAGGGAGAGGGAAGTGAATGAGGAGATGCCAAAGGAGAAAGTGAGAGAGGTAGCGAGAGGTGTTGTGCAAATTGAGTCTGAGATCTGCTCGCTCTCCGCAG
Seq C2 exon
GCTGGTTCTCTGAGACATCCAATGCCAATGCAGAGCCAGCTGCTTCGGGACGGGGTCACGGCTCAGACCACATGGACAAACTAGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061736:ENSDART00000149630:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.843
Domain overlap (PFAM):
C1:
PF0053117=Death=PD(27.7=82.1)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]