RnoINT0017427 @ rn6
Intron Retention
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20448796-20452111:+
Coord C1 exon
chr20:20448796-20448939
Coord A exon
chr20:20448940-20452020
Coord C2 exon
chr20:20452021-20452111
Length
3081 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
GGCAATGTCTTCACTTGCAGGTT
3' ss Score
9.31
Exon sequences
Seq C1 exon
CTGATGCCTTAACTTCGGTCTTAACAAAAATTAACCGAATAGACATAGTAACTCTGCTGGAAGGACCAATATTTGATTATGGGAATATTTCAGGCACCAGAAGCTTTGCAGATGAAAACAATGTTTTCCATGACCCAGTTGATG
Seq A exon
GTAATTGAATTTAGTGTTCATTTCTACTTAATCACTCAATGAAATTGGAACGTGCTATCGGACAAGGCGACCGCTCAGCCACTGTGATTTGCTTGACTTAATTCCCCATTTTCATGGCGTTTTGGTTAGGCCAGAAGGCTACAGATGAGCATTCTGATATCAGAGAAAGCTGAGGCAGTGTCTCCCTCTGTGTGACACAGAGAGTAAAATGTGAAAATACATTTTTTGGAAGAGCTGATGTTTCTACTGTTCTGTGCGGTAGAAACTTAATATCTACAAAGTGCAGTGCTTTGGCATTTAAAAAAAACCTTTTTATCGTCTTTTAACCTACGTACGTAAGATCAAACTGTGAGCCCAGTTTTAAGCGAGTAGGTGATGTGCCAAGCCGCACTGCACGCCATACTGGTCGGGGTAAATACTGAATCAGCTGTTGCAGGGCCAAGCAAGTAGGCGTGCACGGGGGAAATCTACCTTCATTCAGGTGGCTTAGTTATTTAACCTTATGTCAGCCTTCGTTCCACCAGTAATTCCGGGGATGGAGAGTAATATTTGATATGTGGTTCACAAAAGACAGCATTCGTTCTAATTCGGTGAGCACAGAAATCACTGAGAACCTTTTGGTTCAGTTTAATTCAACAATCCCCTCCCCCATTGAACAGCCTGTCTCGGGAGAGCATCAGGAAACACAGAGGACAGCCATGCCTTTGAAACTTGTCCCATCTGGCTTCACAAGAGGGAATCCATCCCCGCAGTGAAGGGTGAATGGGAAATAAGATGTGCCAAGCACAAGAGAAGCCAGGGATGTATTTCTGTTAATTCAAAGGTCAAGAAATACGCCGATCGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTCCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAGAAACGCCGGCCTCGTTCCATATTTAGCTGGCAAACTGACGAACAAGAGCCGAGAACTTTTAAATTGTCTGTATCTTAGCAGAAAAGAGCACAGAATCTTAGAAAGTGCCCATCTCCCAAAGGTGAAGTGCATTTGTAATCCGCAGAACACACATGTTCTTGTGTGTCCTGTCCTATGTGGGAGGCTGTGTATTGGAAAAAATTCATTTGTCTTAGATAAATAGGGCAGATTGAGAATTACTGGCAAGTGCCAGTTAGAGCGCCCTCTAATCTTTATAGGGAAAAGAAAGCGTGAGTATGGTACTCTTGGTTCGTTTTCTTTTAACATTGTAAAGTTTGAATATCAGAAAGCCCACAGCTTCCCGCAATTGTATCTCAATATTGTGTAGTTCCTTTGATTAAATTTTCCGGAAAAAAAAAAAAAACTTAGACACAAAATAAGCTTTACTTACGCAAACTATAAATCATCGCCCGATTTCAGCAAGAGGGTCGTGTATAGGCAGCTGTAGCTGACTGCTGTCCGCCGCCCTGTAGCTGCTTGAGCTTAGAACGGTAGCTGTTAGCCTCGAGCTGCCGGGAACACCCCAGCCTTGGTTTTTGCAGACCAGTGAAGTGAGAACATGCCTTGCTGCATTTAAATGTCTCTTCTCTTTATTGAGCTTTTGGGAAACTCCTTTCCTCACCATGACCAGACCATTGTTTGACTTCTCACTGCTGTACTCCATGGAGAGAGCTTGGAGTCAGGGGTTGGCTCCCTTCCGCCCTTCTGAGCAGGCCAGCACAGCCCTGTTTGAATTCCGGATACTCTTCCCTTACACTCTTCTCCTGTCTCCATTGTGTGCCATTTTTTCCCCTCTTTATTTGCTTCATGGTTCTAAGTAGATCTCCCATCACCAGCTTCACCAAGACCTTTGTATGCACCATGACTCCCTCATCATTGCGTCCTCACGGTGCCTGAAACAAGCGGAGCCCCTTAACTTTCTAACATCTTTTTAAAATATTTAGCCAACGCTACTGGAACTCTAAAGGTCTAGTAATCATTTCCCCCCAGAGTGTAAATTCATTTCTTCTTTCCTCCATAAATTTCATGTAAAGAAGTAATTCCTCCATAAATTTCATGTAAACAAGTAATAATTTAGAGTTGAATTATGTTACTCATGTGTAGAGTTTTTAACCTAAGCAAGGGGTGAATTAATTAAATGGCTTCTTTTCTGGCTTGCTGTGTTGCTCTACCACAGCATAGAGTTTGCATGCTAAAACGAGAAAGATGTGTTAGCCCTGAGCCACATACATGGCTTCTAGATACGACAGCTACCTTTATAATGGAATGTTTCATCTGCATAGTTAAATTACTGTATTAAAGCTGAGAGGGTGTCATTATTTTATTCCATTCAGTAACATGTAACGGAACTAAACCATGAAACTGTGAACATTACTCTGTATCCATCGTACATTGTCATACCTGATATAATTTGAGTTATTCCATGTGTTCGTGTTCAATGTGTTCTAGCTCATTCCAGTCAGTCCGAATGTACTGTCTTCCGTAGGTCACCCTTCCTTTCAAGTGGAGCTGGAGACCCCAATGGGGTTGTACTGCACACCACCCACCCCTTTCCAGCAAGATGACCATTTTAGTGATAACTCTAGCATAGAGTCTCCCTTTAGGACCCCCAGTAGACTGAGTGACGGGCTGATGCCTTCCCAGGGAAGCATAGAGCATCCAGCAGGTGGACCTCCAGTGGTAACTGCAGAAGACACTTCTTTAGAAGACAGCAAAATGGACGATTCAGTAACGGTAACAGAAACGGCTGACCCACTGGACGTAGATGAGAGCCAGTTGAAGGACCTGTGTCAGAGCGAGTGTGCTCACTGCTGGGCGAGTGTGCCCGGGGTCCCAAGCGGCGGTCCGCAGGCAGAGCCACTGAGAGCGCAGACTAGAAAAGTAGGCGTGAGCTCTGAACAGCAGGAGAAAGGAGACTCTGGTCCTGAGGAGGAGATGGCGGACGACAAGGTCAGATCTCTGTTTGAGGACATTCAACTTGAAGAAGTAGAGGCTGAGGAGATGACAGAAGACGAGGGGCAGGCTATACTTAACCGTGTTCCGCGAGCAGAACTGGCAATGTCTTCACTTGCAG
Seq C2 exon
GTTGGCAGAACGAGACGCCAAGTGGAAGCCTAGAGTCCCCGGCGCAAGCGCGAAGAATAACCGGTGGGTTACTGGACCGTCTGGACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288:ENSRNOT00000077620:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.851
Domain overlap (PFAM):
C1:
PF0053117=Death=PD(27.4=46.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]