RnoEX0009393 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20448796-20452111:+
Coord C1 exon
chr20:20448796-20448939
Coord A exon
chr20:20451433-20451896
Coord C2 exon
chr20:20452021-20452111
Length
464 bp
Sequences
Splice sites
3' ss Seq
GAATGTACTGTCTTCCGTAGGTC
3' ss Score
9.43
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
CTGATGCCTTAACTTCGGTCTTAACAAAAATTAACCGAATAGACATAGTAACTCTGCTGGAAGGACCAATATTTGATTATGGGAATATTTCAGGCACCAGAAGCTTTGCAGATGAAAACAATGTTTTCCATGACCCAGTTGATG
Seq A exon
GTCACCCTTCCTTTCAAGTGGAGCTGGAGACCCCAATGGGGTTGTACTGCACACCACCCACCCCTTTCCAGCAAGATGACCATTTTAGTGATAACTCTAGCATAGAGTCTCCCTTTAGGACCCCCAGTAGACTGAGTGACGGGCTGATGCCTTCCCAGGGAAGCATAGAGCATCCAGCAGGTGGACCTCCAGTGGTAACTGCAGAAGACACTTCTTTAGAAGACAGCAAAATGGACGATTCAGTAACGGTAACAGAAACGGCTGACCCACTGGACGTAGATGAGAGCCAGTTGAAGGACCTGTGTCAGAGCGAGTGTGCTCACTGCTGGGCGAGTGTGCCCGGGGTCCCAAGCGGCGGTCCGCAGGCAGAGCCACTGAGAGCGCAGACTAGAAAAGTAGGCGTGAGCTCTGAACAGCAGGAGAAAGGAGACTCTGGTCCTGAGGAGGAGATGGCGGACGACAAG
Seq C2 exon
GTTGGCAGAACGAGACGCCAAGTGGAAGCCTAGAGTCCCCGGCGCAAGCGCGAAGAATAACCGGTGGGTTACTGGACCGTCTGGACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.890 C2=0.851
Domain overlap (PFAM):
C1:
PF0053117=Death=PD(27.4=46.9)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000079630fB1074
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGCCTTAACTTCGGTCT
R:
GTCCAGACGGTCCAGTAACCC
Band lengths:
230-694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]