DreEX6067874 @ danRer10
Exon Skipping
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7616798-7620299:-
Coord C1 exon
chr12:7620156-7620299
Coord A exon
chr12:7617114-7617801
Coord C2 exon
chr12:7616798-7617008
Length
688 bp
Sequences
Splice sites
3' ss Seq
CACTGTGTTGTATCACTCAGGTT
3' ss Score
8.08
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
CGGATGCCTTAGCTGCGGTCCTGACTAAGATCAATCGGTTGGATATTGTGACATTGCTGGAAGGGCCGATATTTGACTATGGTAACATTTCAGGCACAAGATGTTTTGCAGATGATAGCGCAGTTTCCCAGGAGCAGGCTGATG
Seq A exon
GTTACCACAACATTGAGCTGGAGCTCAAGAGTCCCACAGAGCTGAACTATGAACCCCCTACCCCTCTACGTCATGATGATTTCTTTAGTGAAGACAGTATGCTTAAGTTCTCCTCTAGTGCCCCTGTTAGACCCAGTGAACTGTCCTTGCCAACCTCTAGTGGCCCAGTGTCTACAGATACTAAGCCGCCTACCGTCACGGCGGAAGACACAACTATTGGAGGCCGGGAATCCGTTGCCCAGGAAGATGGGTCCGCTGAAGATGACCTTGGTGTCAACCAGGAATTGATATCTCCCTCAAAACAGCATGACAGTGAGGAAACCTCCAAAGAATCAGATGTCTTCCCAAGCAGCCCGGTAAAAGAAAAGGATGCCCAGCCTATGCTTCCCATTTGCGCCTCTGCCAGTGAAGCTGTTAAAGAGTGTGGCAAGTCTGGGTTTGACGAAGAAGACGAAGAGATGACTCAAGATAAAATAAAGTCTCTCTTGGAGACTATTAAGTTGGAGGAAGGCTCAGAGGATGAGGAGATGACTGAGGAGAGGCTGCAAGCGATCCTCTCTCAAGTACAGCAGGCAGAAAAAGACATGTCTTCAATTTCAGGTTTGCAGAGTGAGACGTCTGGTGCAAATGGAAAGACAACAACCGGCCAAGGACTGGGTACTGAGAAACAAGGGCAAAGAGAGACCAG
Seq C2 exon
CCAAGAGCTGAAGTCCTCAATGCCTGGAGTGCAAGCTGAGAGGCAAAATGGAGAACATCCAGAGGTGTTGTCGCCAGACGCCAGTGAGTCTTCCAGCAAACCAAAGGGCAAAGCAAGGAAAGATTCTGAGCGAGAGGAAGCAAGCAGGGAGGTTCTGGAGGACAGAGGACCAAACAACAGGGAGGAGGGCATCTCCGAGCCTAAAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582-'64-55,'64-53,66-55=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.957 C2=1.000
Domain overlap (PFAM):
C1:
PF0053117=Death=PD(27.7=46.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCGGTCCTGACTAAGAT
R:
GACTTTAGGCTCGGAGATGCC
Band lengths:
342-1030
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]