BtaEX0003419 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15855432-15858878:-
Coord C1 exon
chr28:15858735-15858878
Coord A exon
chr28:15855802-15856110
Coord C2 exon
chr28:15855432-15855522
Length
309 bp
Sequences
Splice sites
3' ss Seq
AAATGTACTGTCTTCCATAGGTT
3' ss Score
9.85
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
CTGATGCCTTAACTTCGGTCTTGACAAAAATTAATCGAATAGATATAGTGACTCTGCTAGAAGGACCAATATTTGATTATGGAAATATTTCAGGCACCAGAAGTTTTGCAGATGAGAACAATGTTTTCCATGACCCCGTGGATG
Seq A exon
GTTATCCTTCCCTTCAAGTGGAACTGGAAACTCCCACAGGGTTGCACTACACACCTCCCACCCCTTTCCAGCAAGATGATTATTTTAGTGATCTCTCTAGCATAGAATCTCCCCTTAGAACCCCCAGTAGACTGAGTGATGGGGTAGTGCCTTCCCAGGGAAACATAGAGCATTCAGCAGATGGACCTCCAGTTGTAACTGCAGAAGACACGTCCTTAGAAGACAGCAAACTTGAAGACTCAATGCCTTTAACAGAAATACCTGAAGCAGTGGATGTAGATGAGAGCCAGTTGGAGAATATATGTCTGA
Seq C2 exon
GTTGGCAGAACGAGACATCAAGTGGAAACCTAGAGTCCCCTGCTCAAGCTCGAAGAATAACCGGTGGGTTACTAGATCGACTGGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.877 C2=0.877
Domain overlap (PFAM):
C1:
PF0053117=Death=PD(27.4=46.9)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000061228fB560
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGCCTTAACTTCGGTCTTGA
R:
ATCCAGTCGATCTAGTAACCCACC
Band lengths:
230-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development