GgaEX7006260 @ galGal4
Exon Skipping
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8497436-8502756:+
Coord C1 exon
chr6:8497436-8497579
Coord A exon
chr6:8499862-8500534
Coord C2 exon
chr6:8502378-8502756
Length
673 bp
Sequences
Splice sites
3' ss Seq
AAATGTGCTGTCTTCCTTAGGTT
3' ss Score
10.83
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
CTGATGCCTTAACTTCTGTATTGACAAAAATTAATCGAATAGATATTGTGACCCTGCTGGAAGGACCAATATTTGATTATGGAAATATTTCAGGCACCAGAAGCTTTGCAGATGAAAATAACGTTTTTCATGATCCCATTGATG
Seq A exon
GTTATCCCACCATTCAAGTGGAACTGGAAACTCCCACTGGGTTGCGCTTCGTGCCACCCACCCCTTTCCACCAGGACGATTTCTTTAGCGACACCTCTAGCCTAGAGTCACCCCTTAGAACTCCCAGTAGACTGAGTGACGTGTTAGTGACCTCCCAGGGACATGTAGATGGTACAGCAGCAGCACCGCCAGTGGTGACTGAAGAAGACACCTCACTGGACGACAGCAAGCACGATTTCTCAGTGCCTAGCGAAGGAACACCTAAAGATTTTTCTGTAGGCCAGAGCCAGTTGGAGGAAGTGGACCTTAAGGATTATCCACGGTATCTTGGTAGTTATGGCGGGATACCTAAGGATGCTAAACAAAGGCAGAGCGAAGAGACTAGCAAAGCAGGAGTAAGGACTGAACAGCCTGAGAGAGAAAAGTCTGGTACTGATGAGGAGATAACGGAAGAAAAGTTTAAATCTCTGTTTGAGGACATTCATCTGGAAGAAGGAGCTGAGTCTGAGGAGATGACGGAAGAAAAAGTATGGTCAATTCTTAAAGGTGTTCAGCAAGCAGAACGCGAAATGTCTTCAATTGCAGGTTGGCAGACTGACTCGTCAAGTGTCACTGAGCCACCAACGTCGGGACGCAGGATAGGTGGTAGCCTGCTAGATCGCCTGGATGATAG
Seq C2 exon
CTCGGACCAATGTAGGGACTCTGTTACCTCATATGTCAAAGGAGAAGCAGGGAAGCCAGAAACAAATGGAAGCCTCTCAGAAACCACAACAGAAACAAAAACTAAATCCTATGTCCAGGAATCTTTAAATGACGTGGGAAAACACAGTGACAAAGAAGCCCTGAAAACAAAGTCCCAGATTTCAGCTGGTACTGATGAGCAAACGTTATCATCAACAGCATATCAGAAATCTTTGGAAGAGACTAGCAAGCCAACAACAGAAGGCAACAAAACATCTGTGCCCGTCAGTGTGAAGAAGATGGGCTGGAGTACTTCAGAGGATGGCAAGGCAAGAGCAGGCATCCAAGAGGAGGAGGGAGCAGGAATGTCTGAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'86-66,'86-64,88-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.819 C2=1.000
Domain overlap (PFAM):
C1:
PF0053117=Death=PD(27.4=46.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCAGAAGCTTTGCAGAT
R:
CACTGACGGGCACAGATGTTT
Band lengths:
342-1015
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]