GgaINT1030775 @ galGal4
Intron Retention
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8497436-8500534:+
Coord C1 exon
chr6:8497436-8497579
Coord A exon
chr6:8497580-8499861
Coord C2 exon
chr6:8499862-8500534
Length
2282 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
AAATGTGCTGTCTTCCTTAGGTT
3' ss Score
10.83
Exon sequences
Seq C1 exon
CTGATGCCTTAACTTCTGTATTGACAAAAATTAATCGAATAGATATTGTGACCCTGCTGGAAGGACCAATATTTGATTATGGAAATATTTCAGGCACCAGAAGCTTTGCAGATGAAAATAACGTTTTTCATGATCCCATTGATG
Seq A exon
GTAATTGAATTCCATGGTCAAATTTAGTTTCGTATAATCTCCGATAATCTAATAATGTTGTATGAACTAGATGTTAAGAAAAAAAAGTTCCAAAGAAATGATTGTTTTTCATGTTAAGGCTTTTTCCTCGTGGTGTATTCAGGTTGCACATTAATGTCCCAGAGAACAAGCTCAGAATTCCACAAATGCACACCTAAGTAAGCTCGTTCCCACCAGCCTCTATATTAGTTGACAAGATTTGAATAGACCTGAATGTGTTTCTCCTGCAGTAGTTGTGCTTTGGTGTTTGTCCATTCATGTATGCTTTCCAAGTTAGCTGGAAATCTCTCTTGCTCTCCACATCCCCCACTCTTTGACTTCCTCTCTAGATAAGTAACTGTAAGAATTCTTTCAAGAAAGAAGTGTTTAGCAACTGTATGAGATATCTACAAACAAACATCAATTATTTCAAGTTTTTCATGATTTTTTTAGTTATTATTTTTATTTAGGACCGTTATTATCCACGTATATAGTGGCAGTAGAAAAATGAGAAAATGTTTTATTTTTGCATGAGAAGATACCTTTGTCAGTCTAATGACTAAAACTGTGTAATAACCTTCACACGGAAGCTGTACACACTAAGCATAGAATTGTGCATGGTTATTTTGAGTCAGATCTTAAAAGGATGCATGGAATTTTTGGTTATAAATCAGAATTGATATAGGTATGCTTATTGTTTATCATTACGTTGAAGATGCTAAATGTTGTTTCTTCTTTTAAATGTTAGCTAATGACAGTGGGCTGCTATATTCTTTACTTTGATTTTTTACCGTGTGTTATAACTAGCTTATTAAGTAAGATTTCTTTGACTTCTATTTTCTTTGTTTTTTGTAGTTTATTCCAGTTTGTGTTGGTCCCTCTGTATTTTAGAAGGATGTTCTTGTACTTAGAGCATATAAGCTCAGTGTACTTCCATTGTTGAGCAGCATTGCTGATCATTGAATCATTGCATTACAGAAATAATTTTCTGTTGACATTTTAAGAAAGTTGCTCTTGAAATGTTGCTTGCGCCTTTAAATAGTGGCATCAGTGTTTTTCTGAAGAAAGTACGCTTCTCTGCAGTTGCTTTCTGTCTCTCCTCTTCTCTGAGCCTTCCTCAAGCTTCCTTTCCTCACCAAGACCAGACCGCCTTTGCCTTTCTCTCAGCTGATTCAGAAAACAGAGAAAAAAAAACAAGCCCTGTCAGTGCATCTCCCTTTGCAGGCAGCACAATGTCAAGTTAACCCCAAAGCATGCATTTTTTCCTTCTATAGGTTACACAGTCTGTTATTTGACACAATGAATTCCAGGTTTTGTTGTCATTTTACATGTGTATTCAGTTTAATCCTTTTGTATGATTTTCTTATGTTTTCATCAATTTCCTTTTCTTTTCTCTCTTTATTTGATCAGTGTATCTGATTGTACCCATGTCACCAAGATCGCCTCAGTCTCCAAGATCACCAAGATCTCCTTACCCACCACAGTCCTCTCACCTGTATAACTTTACTGTACCTGAAATATTCATCTAGCTCTCCCTGTGTTTTTTGTATCCTCTTAACTTCTTGTTAACTTCCTTTTTTAGTTTTTTATCGTGCTGTGTATTTACCCCTACCGTTCTTTAGTATCCTCGTTGAGATCCATTTCTATTCCTCATTCTTTAACTATTCCATTCTTGTGGCTCTGTGATTATATTGGAGATAAATATTAGTAGCATTGTCTTGCTAGTATTGTGTATTTTTGATAAAAGTATATTCAGAATGTGGACCTGTTTAATGTGTATTTGCAAAAAGAGTGACTGCCCGATGTTTTGATGTACTTCTTTCTTTAAAGTCTATTTATTAAAACTCCAATTTTAAAGCAGTAAAAGCTTGGAAAGATGTACACAATTTGGCTACAAGATTCTGGACTGGATATAAAGGGACAGCCATCCCTGTCCACATTTGATTCGTTGCATGCTCATAAGGCAATCTGCTATAGCTTGAAAATGTTCAAATGGCTGCAAAAGCAATTGCTGAAATCTTAACAGGCTATTTATGAAATAGTCAAAAGTATTAGCTTTGCTGTACTAGCTTTTTCGGCAATGCTCATTTTTGTTCCATGCGTTTAGAGCAAAGTAAATGAATCTATCAGAACTGCATTTGTTCTTATACACCTGCATCTCCTCATGGTTTTCATACTTTACGTAATTCATGAATCATTTAACATTTGCTGATTCATTGCTCCATGCTTCATCCCAGTCAGTCCAAATGTGCTGTCTTCCTTAG
Seq C2 exon
GTTATCCCACCATTCAAGTGGAACTGGAAACTCCCACTGGGTTGCGCTTCGTGCCACCCACCCCTTTCCACCAGGACGATTTCTTTAGCGACACCTCTAGCCTAGAGTCACCCCTTAGAACTCCCAGTAGACTGAGTGACGTGTTAGTGACCTCCCAGGGACATGTAGATGGTACAGCAGCAGCACCGCCAGTGGTGACTGAAGAAGACACCTCACTGGACGACAGCAAGCACGATTTCTCAGTGCCTAGCGAAGGAACACCTAAAGATTTTTCTGTAGGCCAGAGCCAGTTGGAGGAAGTGGACCTTAAGGATTATCCACGGTATCTTGGTAGTTATGGCGGGATACCTAAGGATGCTAAACAAAGGCAGAGCGAAGAGACTAGCAAAGCAGGAGTAAGGACTGAACAGCCTGAGAGAGAAAAGTCTGGTACTGATGAGGAGATAACGGAAGAAAAGTTTAAATCTCTGTTTGAGGACATTCATCTGGAAGAAGGAGCTGAGTCTGAGGAGATGACGGAAGAAAAAGTATGGTCAATTCTTAAAGGTGTTCAGCAAGCAGAACGCGAAATGTCTTCAATTGCAGGTTGGCAGACTGACTCGTCAAGTGTCACTGAGCCACCAACGTCGGGACGCAGGATAGGTGGTAGCCTGCTAGATCGCCTGGATGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135:ENSGALT00000041033:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.819
Domain overlap (PFAM):
C1:
PF0053117=Death=PD(27.4=46.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]