MmuINT0015160 @ mm9
Intron Retention
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69462103-69465349:+
Coord C1 exon
chr10:69462103-69462246
Coord A exon
chr10:69462247-69464670
Coord C2 exon
chr10:69464671-69465349
Length
2424 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
AAATGTACTGTCTTCCATAGGTC
3' ss Score
10.1
Exon sequences
Seq C1 exon
CTGATGCCTTAACTTCGGTCTTAACGAAGATTAACCGGATAGACATTGTAACTCTGCTGGAAGGACCAATATTTGATTATGGGAATATTTCAGGCACCAGAAGCTTTGCAGATGAAAACAATGTTTTCCATGACCCAGTTGATG
Seq A exon
GTAATTGAATTTAGTGTTCGTATTTACTTAATCGTTCGATGAAATCAGGAAAACACTGTCGGACGAGGCAACCGCTCAGCTACCACGGGCACTGTGATTTGCTTGACTTAATTCCCCATTTTCATGGCATCTTGGTTAGGCTAGAAGTCTACAGATCAGCATTCTGCTATCAGAGCAAGCTCAGGAAATACCTCTCTCTGTGTGACACAGAGGATAAAATGTGAAAATACAGTCTTTGGAAGAGCTGTTGTTTCTAGTGCTCAGCACACCCAGATGGTAGAAAACTTAATATCTATAAAGCAAACGAATGCTGTCTTTTCATTCGTAAGTGAGATCAAACCATGAGCCCAGTTTTAAGCAAGTAGGTAATGTGCCGAGCTGCAACACGCTCTGTACTGGCTGGGGTGAATACTGACTCAACTGTGGCAAGCAAGAACCAAGCAACTAGGCATGCACTGGAGAAGTCTACCATCATCCCAGATAGCTCAGTCACTTAACATTCCATTAGCCTTCTTTATACCAGTAATTCCTGGGATGGAGAGTAATATTTGATGTGTGGTTCACAAAAGACAGCATTCTTTCTAATTTGGTGAGTACAGAAATCACTGAGAAATCACCTTTCCTTTAGTTTAATTTAACAATCCACTCCCCCATTAAACAAATAGCCCGTCGTGGAAGAGCATCAGGAAAAACGTAACAGAAGACAGCCATGTTTTTCGAAACTAGTCCCGTCTCACTTCACAAAAGGGAATCCATCCCCACAGTGAGGGTTGAATGGAAAATAAGATGTGCCAAGAACAAGAGTAGCCAGCGATATGTGTCTGTTAATCAAATGTCAAGAAATATGCTGGTGTTATTTTTCCATATTTAACTGGCAAACATAGGCAAACAAGAGCCAAGAGCTTTTTAAATTCTATGTGTCTCATCAGAAAAGTCGACAGAATCTTAGGAAGTGCCCATTTCCTAAAGGTGAAGTGTATCTGTCATCCAGAAAACATTAATACCATGGGTCCTTGGAACACACATGCTCTTGTGAGCCCTGTCTTAGGTGGGAGGCTATATGTTGGGAAAAAATGCATTTGCACTAGGTGAATAGGGCAGATTGAGAATTACTGGCAAGTTACAGTTAGAGCTTCCTCTACTCTTTATTGGGAAAAGCAAATCACAAGTGTGGTTATTCTTGGTTCATCTTCTCTTAACATTGTAATGTTTGAGTATCATTAAAATAAGCTTGTCGTGGCATTTTGTTATTGTAGCGCAATGTTGTGTGGTTCCTTAATTTAATTTTCCAGGGAAAAGTTAGACACAAAATAAGCTTATGCAAACTAAAAATAAATCTTAGCCCGATTTTAACAGGAGGCTCATTTATAGGCAGCTGTAGCCGGCAGGTGTCCACTAACATATATATAGCAGCTTGAATTTAACAATATTAGCTGTTGGCCTTGAACTACTAGGAAGAGCCCAGTCTTGGGTATTGCAGACCAGTGAATGAAGCACATACCTTGTTGCATTTAAAAGTCTCTCCTCTTTGTTGAGCTTTTGGGAAACCTCCTTCCCTCGCCATGACCAGACCACTGTTGACTTTCTCCCTGCTGGGGCTAGGACAGTCTTCTGTAGGACATGTAGAGCTTAGAATTAGGGTTGACTGTCTTCTCGCCTTCTGAGCAGGCTAGCACAGCCCTGTTCTGAATCCTGAACACTCTTCCCTTACACTCTCCTCCTGTGTCCATTGTGTACCATTTTTTTCCTCCTCTTTATTTGCTTCATGGTTCTAAGGAGATTTCCCATCACCAGCTTCACCAGTACCTCTCTTTGCACCATGACTCCCTCATCACTGCGCCATTAAGGTGCCCGAAGCACTCGGAGTCCCTTGTCTTTCTAACATCCTTTTTAAATCCTTAGCCAACGCTAGTGTAACTCTAAAGGCCTAGTAATCATTTCCACCACCACCACCCCCCCAGAGTGTAAATTCATCCCTCCTTTCCTCCATAAATTTCATGTAAACAAGCAATAATTAGAGTTGGATTATGTTACTCATGTGTAGAGTATTTAACCTAAGCAAGAAGTAATTAATTACAGAAATGGCTTCTTCCAGCTTGCTGTGTTCCACAGCATAGATTTTTTTTGCATGCTAAAATGAGAAAGTTGTGTTAGCCCTAAGCCACATGGCTTCTAGATATGGCAACTAACTTTATAATTGAATTAATTTCTTCTGCATAGTTCCATTACTGTATTAAAACTGATAGGATGCCATTATTTCGTTTCACTCAATGACATGTAACGGAACTAAACCATGAGACTGTGAACATTACTCTGTAACCCATCATGCATTGTCATACCTGATATAATTTGAGTTATTCCATGTGTTTGTGTTCGATGTGTTCTAGCTCATTCCAGTCAGTCCAAATGTACTGTCTTCCATAG
Seq C2 exon
GTCACCCTTCCTTTCAAGTGGAGCTGGAGACCCCCATGGGGTTGTACTGCACACCACCCAACCCTTTCCAGCAAGATGACCATTTTAGTGATATCTCTAGCATAGAGTCTCCCTTTAGGACCCCCAGTAGACTGAGTGACGGGCTGGTGCCTTCCCAGGGAAACATAGAGCATCCAACAGGTGGACCTCCAGTGGTAACCGCAGAGGACACTTCTTTAGAAGACAGCAAAATGGACGATTCTGTAACTGTAACAGACCCGGCCGACCCACTGGACGTAGATGAGAGCCAGTTGAAGGACCTGTGTCAGAGCGAGTGTGCTCAGTGCTGGGCGAGTGTGCCCGGGATCCCAAACGACGGTCGGCAGGCAGAGCCACTGAGACCGCAGACTAGAAAAGTAGGCATGAGCTCTGAACAGCAGGAAAAAGGAAAATCTGGTCCTGATGAGGAAGTGACAGAAGACAAGGTCAAATCTCTGTTTGAGGACATTCAACTTGAAGAAGTAGAGGCTGAGGAGATGACAGAAGACCAGGGGCAGGCTATGCTTAACCGTGTTCAGCGAGCAGAACTGGCAATGTCTTCACTTGCAGGTTGGCAGAACGAGACGCCAAGTGGAAGCCTAGAGTCCCCAGCGCAAGCTCGAAGACTAACTGGTGGGTTACTGGACCGTCTGGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-Ank3:NM_146005:39
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=NA C2=0.890
Domain overlap (PFAM):
C1:
PF0053117=Death=PD(27.4=46.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSMUSP00000045834, ENSMUSP00000061698, ENSMUSP00000090087, ENSMUSP00000090088, ENSMUSP00000090089, ENSMUSP00000090090, ENSMUSP00000090090f5390A, ENSMUSP00000090090f5391A, ENSMUSP00000090090f5392A, ENSMUSP00000090090f5393A, ENSMUSP00000090090f5394A, ENSMUSP00000090090f6290A, ENSMUSP00000090090f6291A
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: