MmuINT1004284 @ mm10
Intron Retention
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69999355-70002601:+
Coord C1 exon
chr10:69999355-69999498
Coord A exon
chr10:69999499-70001922
Coord C2 exon
chr10:70001923-70002601
Length
2424 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
AAATGTACTGTCTTCCATAGGTC
3' ss Score
10.1
Exon sequences
Seq C1 exon
CTGATGCCTTAACTTCGGTCTTAACGAAGATTAACCGGATAGACATTGTAACTCTGCTGGAAGGACCAATATTTGATTATGGGAATATTTCAGGCACCAGAAGCTTTGCAGATGAAAACAATGTTTTCCATGACCCAGTTGATG
Seq A exon
GTAATTGAATTTAGTGTTCGTATTTACTTAATCGTTCGATGAAATCAGGAAAACACTGTCGGACGAGGCAACCGCTCAGCTACCACGGGCACTGTGATTTGCTTGACTTAATTCCCCATTTTCATGGCATCTTGGTTAGGCTAGAAGTCTACAGATCAGCATTCTGCTATCAGAGCAAGCTCAGGAAATACCTCTCTCTGTGTGACACAGAGGATAAAATGTGAAAATACAGTCTTTGGAAGAGCTGTTGTTTCTAGTGCTCAGCACACCCAGATGGTAGAAAACTTAATATCTATAAAGCAAACGAATGCTGTCTTTTCATTCGTAAGTGAGATCAAACCATGAGCCCAGTTTTAAGCAAGTAGGTAATGTGCCGAGCTGCAACACGCTCTGTACTGGCTGGGGTGAATACTGACTCAACTGTGGCAAGCAAGAACCAAGCAACTAGGCATGCACTGGAGAAGTCTACCATCATCCCAGATAGCTCAGTCACTTAACATTCCATTAGCCTTCTTTATACCAGTAATTCCTGGGATGGAGAGTAATATTTGATGTGTGGTTCACAAAAGACAGCATTCTTTCTAATTTGGTGAGTACAGAAATCACTGAGAAATCACCTTTCCTTTAGTTTAATTTAACAATCCACTCCCCCATTAAACAAATAGCCCGTCGTGGAAGAGCATCAGGAAAAACGTAACAGAAGACAGCCATGTTTTTCGAAACTAGTCCCGTCTCACTTCACAAAAGGGAATCCATCCCCACAGTGAGGGTTGAATGGAAAATAAGATGTGCCAAGAACAAGAGTAGCCAGCGATATGTGTCTGTTAATCAAATGTCAAGAAATATGCTGGTGTTATTTTTCCATATTTAACTGGCAAACATAGGCAAACAAGAGCCAAGAGCTTTTTAAATTCTATGTGTCTCATCAGAAAAGTCGACAGAATCTTAGGAAGTGCCCATTTCCTAAAGGTGAAGTGTATCTGTCATCCAGAAAACATTAATACCATGGGTCCTTGGAACACACATGCTCTTGTGAGCCCTGTCTTAGGTGGGAGGCTATATGTTGGGAAAAAATGCATTTGCACTAGGTGAATAGGGCAGATTGAGAATTACTGGCAAGTTACAGTTAGAGCTTCCTCTACTCTTTATTGGGAAAAGCAAATCACAAGTGTGGTTATTCTTGGTTCATCTTCTCTTAACATTGTAATGTTTGAGTATCATTAAAATAAGCTTGTCGTGGCATTTTGTTATTGTAGCGCAATGTTGTGTGGTTCCTTAATTTAATTTTCCAGGGAAAAGTTAGACACAAAATAAGCTTATGCAAACTAAAAATAAATCTTAGCCCGATTTTAACAGGAGGCTCATTTATAGGCAGCTGTAGCCGGCAGGTGTCCACTAACATATATATAGCAGCTTGAATTTAACAATATTAGCTGTTGGCCTTGAACTACTAGGAAGAGCCCAGTCTTGGGTATTGCAGACCAGTGAATGAAGCACATACCTTGTTGCATTTAAAAGTCTCTCCTCTTTGTTGAGCTTTTGGGAAACCTCCTTCCCTCGCCATGACCAGACCACTGTTGACTTTCTCCCTGCTGGGGCTAGGACAGTCTTCTGTAGGACATGTAGAGCTTAGAATTAGGGTTGACTGTCTTCTCGCCTTCTGAGCAGGCTAGCACAGCCCTGTTCTGAATCCTGAACACTCTTCCCTTACACTCTCCTCCTGTGTCCATTGTGTACCATTTTTTTCCTCCTCTTTATTTGCTTCATGGTTCTAAGGAGATTTCCCATCACCAGCTTCACCAGTACCTCTCTTTGCACCATGACTCCCTCATCACTGCGCCATTAAGGTGCCCGAAGCACTCGGAGTCCCTTGTCTTTCTAACATCCTTTTTAAATCCTTAGCCAACGCTAGTGTAACTCTAAAGGCCTAGTAATCATTTCCACCACCACCACCCCCCCAGAGTGTAAATTCATCCCTCCTTTCCTCCATAAATTTCATGTAAACAAGCAATAATTAGAGTTGGATTATGTTACTCATGTGTAGAGTATTTAACCTAAGCAAGAAGTAATTAATTACAGAAATGGCTTCTTCCAGCTTGCTGTGTTCCACAGCATAGATTTTTTTTGCATGCTAAAATGAGAAAGTTGTGTTAGCCCTAAGCCACATGGCTTCTAGATATGGCAACTAACTTTATAATTGAATTAATTTCTTCTGCATAGTTCCATTACTGTATTAAAACTGATAGGATGCCATTATTTCGTTTCACTCAATGACATGTAACGGAACTAAACCATGAGACTGTGAACATTACTCTGTAACCCATCATGCATTGTCATACCTGATATAATTTGAGTTATTCCATGTGTTTGTGTTCGATGTGTTCTAGCTCATTCCAGTCAGTCCAAATGTACTGTCTTCCATAG
Seq C2 exon
GTCACCCTTCCTTTCAAGTGGAGCTGGAGACCCCCATGGGGTTGTACTGCACACCACCCAACCCTTTCCAGCAAGATGACCATTTTAGTGATATCTCTAGCATAGAGTCTCCCTTTAGGACCCCCAGTAGACTGAGTGACGGGCTGGTGCCTTCCCAGGGAAACATAGAGCATCCAACAGGTGGACCTCCAGTGGTAACCGCAGAGGACACTTCTTTAGAAGACAGCAAAATGGACGATTCTGTAACTGTAACAGACCCGGCCGACCCACTGGACGTAGATGAGAGCCAGTTGAAGGACCTGTGTCAGAGCGAGTGTGCTCAGTGCTGGGCGAGTGTGCCCGGGATCCCAAACGACGGTCGGCAGGCAGAGCCACTGAGACCGCAGACTAGAAAAGTAGGCATGAGCTCTGAACAGCAGGAAAAAGGAAAATCTGGTCCTGATGAGGAAGTGACAGAAGACAAGGTCAAATCTCTGTTTGAGGACATTCAACTTGAAGAAGTAGAGGCTGAGGAGATGACAGAAGACCAGGGGCAGGCTATGCTTAACCGTGTTCAGCGAGCAGAACTGGCAATGTCTTCACTTGCAGGTTGGCAGAACGAGACGCCAAGTGGAAGCCTAGAGTCCCCAGCGCAAGCTCGAAGACTAACTGGTGGGTTACTGGACCGTCTGGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601:ENSMUST00000182884:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.897
Domain overlap (PFAM):
C1:
PF0053117=Death=PD(27.4=46.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSMUSP00000045834, ENSMUSP00000061698, ENSMUSP00000090087, ENSMUSP00000090088, ENSMUSP00000090089, ENSMUSP00000090090, ENSMUSP00000138095, ENSMUSP00000138123, ENSMUSP00000138285, ENSMUSP00000138326, ENSMUSP00000138337, ENSMUSP00000138347, ENSMUSP00000138348, ENSMUSP00000138356, ENSMUSP00000138413, ENSMUSP00000138450, ENSMUSP00000138481, ENSMUSP00000138531, ENSMUSP00000138586, ENSMUSP00000138623, ENSMUSP00000138671, ENSMUSP00000138686, ENSMUSP00000139496, ENSMUSP00000151906
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types