DreALTD0003114-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000061736 | ank3a
Description
ankyrin 3a [Source:ZFIN;Acc:ZDB-GENE-060621-1]
Coordinates
chr17:20684674-20685683:-
Coord C1 exon
chr17:20685627-20685683
Coord A exon
chr17:20685552-20685626
Coord C2 exon
chr17:20684674-20684760
Length
75 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGC
5' ss Score
3.52
3' ss Seq
CTCTATATTTGTGCAAACAGGGA
3' ss Score
7
Exon sequences
Seq C1 exon
GTCATTCGAAAGGTAATTTGCCGTGTGGACTCTCCCACTCCTGAAAACCAGGGTTTG
Seq A exon
GTGAGTGACACTGGGTCACAGGGAGACTCTTCGACAGGGGATGAGATCCAAGTCCCCCTAACTACCCACGCTGAG
Seq C2 exon
GGAGACATTTCCAAGGCGAGGAAGAAGGAAGACAAACGTTCAGAAAGAAAACATCATTCGTAGATGTGGCTTCATGACTATAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061736-63-65,64-65-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATTCGAAAGGTAATTTGCCGT
R:
CTGTCTATAGTCATGAAGCCACA
Band lengths:
144-219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]