DreALTD0004259-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000006527 | brd3a
Description
bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
Coordinates
chr21:18234026-18234520:-
Coord C1 exon
chr21:18234469-18234520
Coord A exon
chr21:18234454-18234468
Coord C2 exon
chr21:18234026-18234094
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TGCCATTTTTTTTTTACCAGTGT
3' ss Score
8.1
Exon sequences
Seq C1 exon
CTCCGACTCTGAGGAGGAGAGGGCCACCCGGCTTGCCGAGCTGCAGGAACAG
Seq A exon
GTGGGTGCGGAACAG
Seq C2 exon
TGTATCTCTTTGGAGCACCCCATTGGTAGCAGAAAGGGGATAAAAAACGGGTGCACCAAGAATAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006527-14-13,15-13-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.768 A=NA C2=0.870
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGACTCTGAGGAGGAGAG
R:
ATTCTTGGTGCACCCGTTTTT
Band lengths:
115-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]