DreEX0017295 @ danRer10
Exon Skipping
Gene
ENSDARG00000006527 | brd3a
Description
bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
Coordinates
chr21:18232943-18234660:-
Coord C1 exon
chr21:18234454-18234660
Coord A exon
chr21:18234026-18234094
Coord C2 exon
chr21:18232943-18233160
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGCCATTTTTTTTTTACCAGTGT
3' ss Score
8.1
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
GATGTGTTTGAAATGCGATTTGCAAAGATGCCTGATGAGCCAGTGGAGGTTCCTGGGGCAGGTGGTGTAGGTGGGGCCGGTGTGGTCAGTAAGAGTACTGTCAGCAGTGAGAGCAGTGGCGACTCCTCCACCTCTGACAGCTCCGACTCTGAGGAGGAGAGGGCCACCCGGCTTGCCGAGCTGCAGGAACAGGTGGGTGCGGAACAG
Seq A exon
TGTATCTCTTTGGAGCACCCCATTGGTAGCAGAAAGGGGATAAAAAACGGGTGCACCAAGAATAATCAG
Seq C2 exon
CTGAAAGCCGTCCACGAACAGCTAGCTGCTCTTTCTCAGGCCCCTGTAAGTAAACCAAAGAAAAAGAAAGAGAAGAAAGAAAAAGATAAGAAAAAGAAAGAGAACAAGCACAACAAATCCAAGCCAGAGGAAAAAGCCAAGCCGGGACAGCCACCGAAACCAGCCCAGCAGAAAAAGGGTCCCACCAGAAAGGCTAACAGCACTGTTCCAGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006527_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.768 A=0.870 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCAGCAGTGAGAGCAGTG
R:
TGGTTTACTTACAGGGGCCTGA
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]