DreALTD0004468-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000001881 | cacnb3a
Description
calcium channel, voltage-dependent, beta 3a [Source:ZFIN;Acc:ZDB-GENE-060221-2]
Coordinates
chr23:14397884-14398262:+
Coord C1 exon
chr23:14397884-14397957
Coord A exon
chr23:14397958-14397963
Coord C2 exon
chr23:14398243-14398262
Length
6 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TGTTCTCTTATTTTCTAAAGCCA
3' ss Score
5.43
Exon sequences
Seq C1 exon
GAAAAGCGGTAACTCATCCTCAAGCCTGGGTGACATGGTTTCAGGGGGTTGGAGATCCACACCGCCATCTGCAG
Seq A exon
GTGAGA
Seq C2 exon
CCAAACAGAAGCTAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001881-7-5,8-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]