DreINT0040166 @ danRer10
Intron Retention
Gene
ENSDARG00000001881 | cacnb3a
Description
calcium channel, voltage-dependent, beta 3a [Source:ZFIN;Acc:ZDB-GENE-060221-2]
Coordinates
chr23:14397884-14398262:+
Coord C1 exon
chr23:14397884-14397957
Coord A exon
chr23:14397958-14398242
Coord C2 exon
chr23:14398243-14398262
Length
285 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGTTCTCTTATTTTCTAAAGCCA
3' ss Score
5.43
Exon sequences
Seq C1 exon
GAAAAGCGGTAACTCATCCTCAAGCCTGGGTGACATGGTTTCAGGGGGTTGGAGATCCACACCGCCATCTGCAG
Seq A exon
GTGAGAGTGAGTATGACAGGGCCTCTGCAGGGGATGTGTGTGGCTGGAAATGCTGCCTCAAATGAGCACAATATCAGTAGGGCTGAACTGAAGATCAGTGAGTTTGTTCTTCCCTTGCTTTTCTTTCTCATTCGTTCCTCCTCTTTTTTTAGTATAATGCATGCTCTGTCACAGGCAAATACATTAGGCTAATGCTTGTAAAAGTTCAGACTACAGTCAAAATATGAGGAATCCTTCTGCAATTTTCTGAATGCTGATTCTGATGTGTTCTCTTATTTTCTAAAG
Seq C2 exon
CCAAACAGAAGCTAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001881:ENSDART00000087280:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]