DreALTD0005029-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000044811 | cdk9
Description
cyclin-dependent kinase 9 (CDC2-related kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-321]
Coordinates
chr21:6036227-6040555:+
Coord C1 exon
chr21:6036227-6036317
Coord A exon
NA
Coord C2 exon
chr21:6040389-6040555
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
GCTGGTCTCATTTCTTTCAGCCA
3' ss Score
6.8
Exon sequences
Seq C1 exon
TTTCCCATCACGGCTCTGAGGGAGATCAAGATCTTGCAGCTTCTCAAACACGAGAATGTGGTCAACCTCATCGAGATCTGCAGAACAAAGG
Seq A exon
NA
Seq C2 exon
CCACCCAGTTTAACCGTTACAAGGGCAGCATTTATCTGGTGTTTGACTTCTGTGAGCACGACCTCGCTGGACTGCTGAGCAACGCTAATGTTAAGTTCACTCTGGCGGAGATCAAGAGGGTCATGCAGATGCTGCTCAACGGACTCTACTACATACACAGAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044811-3-7,4-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(18.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGCAGCTTCTCAAACACGA
R:
AATGCTGCCCTTGTAACGGTT
Band lengths:
92-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]