DreALTD0006065-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000078233 | ctnnd1
Description
catenin (cadherin-associated protein), delta 1 [Source:ZFIN;Acc:ZDB-GENE-110208-9]
Coordinates
chr1:43523508-43527762:+
Coord C1 exon
chr1:43523508-43523562
Coord A exon
NA
Coord C2 exon
chr1:43525754-43527762
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTTAGG
5' ss Score
3.39
3' ss Seq
CCTCTGTTTTATCTCCACAGAAA
3' ss Score
11.83
Exon sequences
Seq C1 exon
GGAGGAATGTATGGGGAGAGGCGGGGCTCTTTGCCTCTGTTGGACTCTTATGATG
Seq A exon
NA
Seq C2 exon
AAAATCTGATCGTGTGCATCACCCGCCGTGAGTTTCCTCCTCCTGCTTACTGTCCCTGCTGAGCGTCTGATCTCATCACTTACGGGACCATCGCCACTAAAATTACAGCCCGCCCTTCTGTAGCTACTCTCCGTGAGATCAATGTGATTCTTGAGAAACATAAACAGCCACTACTTCTAATGGACACTACAATCAGACTTGTTTTCGGTTCATACCACTTTTATTTTTACATTTTGAGTTTTTTTTGGTCGAATAACGCAAACACTATTGACAGAAAAGTCTGTTTAGTCGCATCCCCAGCTTATCAAAGCTTATTGATTTTCATCGTCTATTAGAACACTAGTATAAGTCGTTGATTTCTTCAGCTTCATCCTGCTTCGTGGTTCACATTTGATGTATAAAAACGAAAACGTAAATGCCAAATCGCATCATTCATACATGTGGCCTGAAGAAAATAATGTATATAGGATATCTCGGTAAGTTTTATGTCTTAATGCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078233-29-28,31-28-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATGTATGGGGAGAGGCG
R:
GCGATGGTCCCGTAAGTGATG
Band lengths:
147-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]