DreEX6032657 @ danRer10
Exon Skipping
Gene
ENSDARG00000078233 | ctnnd1
Description
catenin (cadherin-associated protein), delta 1 [Source:ZFIN;Acc:ZDB-GENE-110208-9]
Coordinates
chr1:43522054-43527762:+
Coord C1 exon
chr1:43522054-43522136
Coord A exon
chr1:43523508-43523602
Coord C2 exon
chr1:43525754-43527762
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCTCTCTCTCAGGGA
3' ss Score
13.06
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
ACGCTTATTCAACAATAGACCAGCGAGGACGGAGAAACACTTTAGATGACACTCTGGACCGCTCAGACAGAGACGCACCTCAG
Seq A exon
GGAGGAATGTATGGGGAGAGGCGGGGCTCTTTGCCTCTGTTGGACTCTTATGATGGTTAGGCTCCTCCCCTTCACTCAGTGCATGAGCAGGCATG
Seq C2 exon
AAAATCTGATCGTGTGCATCACCCGCCGTGAGTTTCCTCCTCCTGCTTACTGTCCCTGCTGAGCGTCTGATCTCATCACTTACGGGACCATCGCCACTAAAATTACAGCCCGCCCTTCTGTAGCTACTCTCCGTGAGATCAATGTGATTCTTGAGAAACATAAACAGCCACTACTTCTAATGGACACTACAATCAGACTTGTTTTCGGTTCATACCACTTTTATTTTTACATTTTGAGTTTTTTTTGGTCGAATAACGCAAACACTATTGACAGAAAAGTCTGTTTAGTCGCATCCCCAGCTTATCAAAGCTTATTGATTTTCATCGTCTATTAGAACACTAGTATAAGTCGTTGATTTCTTCAGCTTCATCCTGCTTCGTGGTTCACATTTGATGTATAAAAACGAAAACGTAAATGCCAAATCGCATCATTCATACATGTGGCCTGAAGAAAATAATGTATATAGGATATCTCGGTAAGTTTTATGTCTTAATGCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078233-'28-28,'28-27,31-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGGACGGAGAAACACTTT
R:
CAGAAGGGCGGGCTGTAATTT
Band lengths:
181-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]