BtaEX0010331 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002411 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:HGNC:2515]
Coordinates
chr15:82325984-82329276:+
Coord C1 exon
chr15:82325984-82326087
Coord A exon
chr15:82326513-82326596
Coord C2 exon
chr15:82326858-82329276
Length
84 bp
Sequences
Splice sites
3' ss Seq
ACACATGGCATGTTTCACAGCAG
3' ss Score
3.88
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
ATAACAACTATTCCACACTCAATGAAAGAGGGGACCACAACAGAACACTGGACCGACCCGGAGACCTAGGCGAAATGGAGCCACTGAAGGGAGCACCCCTGATG
Seq A exon
CAGGACGAGGGGCAGGAGTCTCTGGAGGAGGAGTTGGATGTGTTGTTTTTGGATGAGGGGGAGCCCATGTCTTGCCCTGCCATG
Seq C2 exon
CAGAAGATTTAGCACCACTCTCTCCGCTACATCCGGGCTTATAATATATGTACTTTTATTTTTTGGTGGTGAAATGGACTGATGATTTTCCCTTTCTTCGCTGGACTGTTGTGCCAACTGCCAGGCTGCCTCCTGCCTTGATGGCCCTGAAGTGGCTGCCTTCTTTCCATCAACTCCCTAACTGCTTCCAGTGAAGCTTAATTGTCCCTCTTCCCCCCTCCAGACCCCTCCAGTCACTCCCGAGAAGCCTGACTCAGTTATAGACATATCTTGAGAAACTGCTGCAGATTAGCTCTTTTTGCCAGCTCTCCCTGGAACTCTTGGCCTTGGTGGAGGGAGGGAGAGAGTGGGAACCTTCACTGGAAACCTTGGAAAGAACCGGAAGTTACATGCTATACATGCCGTGTCCAGCAATCTGATAAACTGATGATTCTTAATCAAGATTTTTCTTTTCCTGGTGGGGAAGGGACTTTTTTTTTTTTTTTTTTTTGAGAATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002411_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCACAACAGAACACTGG
R:
ACAGTCCAGCGAAGAAAGGGA
Band lengths:
183-267
Functional annotations
There are 1 annotated functions for this event
PMID: 10393933
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding, mutation analysis. ELM ID: ELMI000915; ELM sequence: ESLEEELDVLVLDDE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development