RnoEX0025202 @ rn6
Exon Skipping
Gene
ENSRNOG00000030790 | Ctnnd1
Description
catenin delta 1 [Source:RGD Symbol;Acc:1305643]
Coordinates
chr3:72002444-72004847:-
Coord C1 exon
chr3:72004744-72004847
Coord A exon
chr3:72004303-72004389
Coord C2 exon
chr3:72002444-72004015
Length
87 bp
Sequences
Splice sites
3' ss Seq
CAAATTGCATGTGTTCACAGCAG
3' ss Score
4.63
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
ATAACAACTATTCCACACTGAATGAGAGAGGAGACCACAACAGAACACTGGACCGATCTGGGGATTTGGGTGATATGGAGCCATTGAAGGGAGCACCCTTGATG
Seq A exon
CAGGACGAGGGGCAGGAATCTTTGGAGGAAGAGTTGGATGTGTTGGTTTTGGATGATGAGGGGAACCAAGTGTCTTACCCCCCCATG
Seq C2 exon
CAGAAGATTTAGCACCACTCTACCTTCTCCATATGGGCTTATAATATATTACTTTTATTTTTTGGTGGTGAAATGGACTGATGATTTTTTTCCTTTCTTCGCTGGACTATTGTGCCAACTGCCAGGCTGACTCCTACCCTTGTAGCCCAAAGTGGCTGCTTTCATCCGTGAATTATCAACATCTTCCACTGAAGTTTAATTGTCCTCTCCTCCCAGCCCCTACTTCCAGTTTTCCCCCAAGAAACCTGACTCAGTTATTTGCATATCTTGAACCTGCTGCAGATTAGCTCTTTTTGCCAGCCTTCCCTGGACCTCTTGGCCTTGTATAGAGAGAGGGAGGGAGAGTGGAACTCTCTACTGGAATCATTGGGAAGAACTGAAAATTACACGCTGTCTGTTCAGCATTCAGCATTCTGACAAACTGATGACTTTTAATCAAGACTATTTTTTCTGGTGTGGGGGAATTTTTTATTTTGCTGTGGATGGGGAAGTGTGAGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030790_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000064009fB3709
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGACCGATCTGGGGATTT
R:
TGGCACAATAGTCCAGCGAAG
Band lengths:
175-262
Functional annotations
There are 1 annotated functions for this event
PMID: 10393933
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding, mutation analysis. ELM ID: ELMI000915; ELM sequence: ESLEEELDVLVLDDE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]