GgaEX0010415 @ galGal3
Exon Skipping
Gene
ENSGALG00000007330 | Q5ZJ21_CHICK
Description
NA
Coordinates
chr5:18129474-18130416:-
Coord C1 exon
chr5:18130319-18130416
Coord A exon
chr5:18130128-18130193
Coord C2 exon
chr5:18129474-18129928
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTAACCCCGTGTGTCTGCAGCAG
3' ss Score
7.59
5' ss Seq
TCGGTATGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
ACAACTATTCCACACTTAATGAGATGGACCACAGCAGGACACTGGACCGATCTGGTGATCTTGGAGACACGGAGCCAGTGAAGGCAGCACCATTGATG
Seq A exon
CAGGAGGAGGGGCAGGAATCCCAGCCTGAGGCAGAGGAAGATTCTGCTGTGTTTTCCCCCGCGTCG
Seq C2 exon
CAGAAGATCTAGCTGCACTCCCTGCCTCCACTCAATTTGGTTGATAATATATTTTATATATTATAAATATATATAACTCTTCGTGGTGGAATGGACCGAATTTTTTTCAACCTGCTTTTTTTTTTTGCTGGACTGTTTGTGCCAACTAGCCAGCCAAATGACTGGGCCTGGTCCCACAGGAGGCAGCCCAGGCTGCTCTGCCTCCTCTCGGTGGCTGCACCTCCCTGTTCTGGGACAACTATCAATAACTCTTCCTCCCTGTCCTCCACCACTTCCCTTCCTTCAAAGAGGAGGCCCTCCTGCCTGACTGCCTGCGCCAACTGGCAAGGATGCTGCAAAACAATTCCAGACCTCTGCCTTGACCAGGAACTGCCTTCTGCCTCGCCTTCCTTCTGCTTGGAGTCTACTGCAGGGACAGGGACCGAAGGCCTTACTTGCCACCTTCCTTTGTTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007330-'26-21,'26-19,27-21
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGATGGACCACAGCAGGA
R:
AATTCGGTCCATTCCACCACG
Band lengths:
182-248
Functional annotations
There are 1 annotated functions for this event
PMID: 10393933
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding, mutation analysis. ELM ID: ELMI000915; ELM sequence: ESLEEELDVLVLDDE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]