GgaEX0010415 @ galGal4
Exon Skipping
Gene
ENSGALG00000007330 | CTNND1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q5ZJ21]
Coordinates
chr5:16245180-16245756:-
Coord C1 exon
chr5:16245659-16245756
Coord A exon
chr5:16245468-16245533
Coord C2 exon
chr5:16245180-16245268
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTAACCCCGTGTGTCTGCAGCAG
3' ss Score
7.59
5' ss Seq
TCGGTATGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
ACAACTATTCCACACTTAATGAGATGGACCACAGCAGGACACTGGACCGATCTGGTGATCTTGGAGACACGGAGCCAGTGAAGGCAGCACCATTGATG
Seq A exon
CAGGAGGAGGGGCAGGAATCCCAGCCTGAGGCAGAGGAAGATTCTGCTGTGTTTTCCCCCGCGTCG
Seq C2 exon
CAGAAGATCTAGCTGCACTCCCTGCCTCCACTCAATTTGGTTGATAATATATTTTATATATTATAAATATATATAACTCTTCGTGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007330-'43-38,'43-36,44-38
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCACACTTAATGAGATGGACCAC
R:
TCAACCAAATTGAGTGGAGGCA
Band lengths:
135-201
Functional annotations
There are 1 annotated functions for this event
PMID: 10393933
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding, mutation analysis. ELM ID: ELMI000915; ELM sequence: ESLEEELDVLVLDDE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]