GgaINT1010764 @ galGal4
Intron Retention
Gene
ENSGALG00000007330 | CTNND1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q5ZJ21]
Coordinates
chr5:16245180-16245533:-
Coord C1 exon
chr5:16245468-16245533
Coord A exon
chr5:16245269-16245467
Coord C2 exon
chr5:16245180-16245268
Length
199 bp
Sequences
Splice sites
5' ss Seq
TCGGTATGT
5' ss Score
9.22
3' ss Seq
CTTCCCCTTTCTCTCCACAGCAG
3' ss Score
12.5
Exon sequences
Seq C1 exon
CAGGAGGAGGGGCAGGAATCCCAGCCTGAGGCAGAGGAAGATTCTGCTGTGTTTTCCCCCGCGTCG
Seq A exon
GTATGTCCTGCAGCACCCTGTCCAATCTGAATAGCGGTGGCAAATCGTGCTGTGCTGTTAGGGGTGCTTTGGGCAGCCAAATCGTGCTCTGATCGCTGCTGTCTGCAATCACTGTCTGATCCACGGGGGCCGTAAACACATCTTCACTGATTGTTCCTGCTCTGGATGTGCTAACACGTCTTCCCCTTTCTCTCCACAG
Seq C2 exon
CAGAAGATCTAGCTGCACTCCCTGCCTCCACTCAATTTGGTTGATAATATATTTTATATATTATAAATATATATAACTCTTCGTGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007330:ENSGALT00000011857:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGGAGGGGCAGGAATC
R:
CCAAATTGAGTGGAGGCAGGG
Band lengths:
106-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]