RnoINT0043149 @ rn6
Intron Retention
Gene
ENSRNOG00000030790 | Ctnnd1
Description
catenin delta 1 [Source:RGD Symbol;Acc:1305643]
Coordinates
chr3:72002444-72004847:-
Coord C1 exon
chr3:72004744-72004847
Coord A exon
chr3:72004016-72004743
Coord C2 exon
chr3:72002444-72004015
Length
728 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
TCTTTTTTTTTTCCCCACAGCAG
3' ss Score
11.38
Exon sequences
Seq C1 exon
ATAACAACTATTCCACACTGAATGAGAGAGGAGACCACAACAGAACACTGGACCGATCTGGGGATTTGGGTGATATGGAGCCATTGAAGGGAGCACCCTTGATG
Seq A exon
GTAAATCCTTATTATATATTGCTGTGTGTATGAGGCTAATGGTATATTGAAACTGTATATTATATAAAATGGGGGGGAGAGAAAGATAAATCTTTTTTTGGTAGGTGTTTTCAGGAAAAAGTAGAGGCTTTGATGCAACTTGACGGTTCTTGAGATGTTTTTCATTAATTGTGTTGCTGATGTCACTGACGCTAACTAATCTCTCTAGTACATCACCTGCTCCTGTTTAGGGTATTTGCCCTGGACTCTTAACCGTGTTTGTTTACTTTACCAATGTTGGGATTTTCTTTAGATCTGGCACACACTTAGAGATTCTTACCTTGGCTCTCACTAACAAATTGCATGTGTTCACAGCAGGACGAGGGGCAGGAATCTTTGGAGGAAGAGTTGGATGTGTTGGTTTTGGATGATGAGGGGAACCAAGTGTCTTACCCCCCCATGGTATGTCCTCCAGTCACTCCTAAGATGGTCCTGAGGAAGGAGGTCCCTATGTGCCTATTCTTTGCCAATCATGCTGATCTGATCAGGCCTGAGACACTTGAGTGAGCCACATGATACCCAAGGGTTCTGCTTCTGTGATCATGACCTCTTCGAAGGCTGGGATGCGGCAGATGATCTGGTTCTCTGTTGTGTGCTTTCCTGCCTCCAGATCTGCTCAGCTGTGTTTGTTCCCCCATCCTCCTGTTCTCAGCCTTATTAACAGCCTTCTCTTTTTTTTTTCCCCACAG
Seq C2 exon
CAGAAGATTTAGCACCACTCTACCTTCTCCATATGGGCTTATAATATATTACTTTTATTTTTTGGTGGTGAAATGGACTGATGATTTTTTTCCTTTCTTCGCTGGACTATTGTGCCAACTGCCAGGCTGACTCCTACCCTTGTAGCCCAAAGTGGCTGCTTTCATCCGTGAATTATCAACATCTTCCACTGAAGTTTAATTGTCCTCTCCTCCCAGCCCCTACTTCCAGTTTTCCCCCAAGAAACCTGACTCAGTTATTTGCATATCTTGAACCTGCTGCAGATTAGCTCTTTTTGCCAGCCTTCCCTGGACCTCTTGGCCTTGTATAGAGAGAGGGAGGGAGAGTGGAACTCTCTACTGGAATCATTGGGAAGAACTGAAAATTACACGCTGTCTGTTCAGCATTCAGCATTCTGACAAACTGATGACTTTTAATCAAGACTATTTTTTCTGGTGTGGGGGAATTTTTTATTTTGCTGTGGATGGGGAAGTGTGAGTCCTTCCCTTATGCAGTGGCTGTTTTTGAAGCCATGAAGGCTGGAAACATTGGCGCATTCCACCTGGCAAGGGCCTCCAGTAAGTGAAGTACTCCCACCCTCGGAGTAAGAACTCTTCTTCCTCCTGTCCGACCGAGGCAGGGACCGCAAAGGACCTACAGACTCCATCTCCTCTGTCAGCTGCAGGGCAACCTTGGGGTGCTGTCCTGATCAAGGCTGTCTCTAACCCTCCTCTCCTACCCTGTGATAAAACTGCTAACTTGACCTGGCCGTTTGCAAGATGCTTTGTAAAAAGGAGAATGCCACGGAGCCGTTGGTTGTTGAGAAGAAACAAAGATTGTCTGTTGCGAAGATAAACCTCTAGGAGGAACTAGAAGGAATGTACATGAAGTGGTTAGTCTGAAACTGGCAGGAAGCTTCCAGGCTGGCTTTCCCCAGCCTTCCCCACCCATCTCTCTTCTTCCTTTATAAGCTTGTCCTCCCTCTCCTCCCCCTCCCTGGATTTGTTGGCCAACTACAAGACTTGTACATAACTCCTCCCCCTTTCCCTTCTAAGGTAGGAGCTGCCCTGGCTTTGCCTCTTCTCTGTGCCTTTGGCCTGGGGTGCACCTCCTCCCTCTCTTCCAGGTGCCTTTCTTTGCCTCTGCAGTCTCATTTCTCATGATTTTGCAAGTTAGATTTTGTTATTTTCTTACCCACTGTTGGCCCCCAGTAGCTGAAGGAAAGAAGAGAAGTGGTAACCTAGGGAACTTCAAGTCCCCACTGGGGGTTGTTAAAGCCTCTGGTGTATCACAGCAGGATGCTGCTCAACAGCTTACAGTTGGGATGGGTGAAGATCAAAGTGAGGCTGTTAGGAGGGAGCGCCGTGACTGACTCCTGAGTTGTCCCCAGATCCCATCATCTCTGAAAGGCTACAGGGAATCAGGCCTTGCCTCCATTGCACCCTTACTGTTATAGTGAATGGTATAGCTTGGGCTAGAGAAGCAGCTACTATGTGGGTTCAATTTTTTAACTCTTTTTCCTTATTTGCTTTCTTTCCTTAATCTAAAAGCTCTATTCAATGCAACTGGAATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030790:ENSRNOT00000064009:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGCCATTGAAGGGAGCA
R:
TACAAGGCCAAGAGGTCCAGG
Band lengths:
356-1084
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]