HsaINT0042889 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr11:57815394-57817940:+
Coord C1 exon
chr11:57815394-57815500
Coord A exon
chr11:57815501-57816299
Coord C2 exon
chr11:57816300-57817940
Length
799 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
CTCTTTTTTCTCCACAGCAGAAG
3' ss Score
5.88
Exon sequences
Seq C1 exon
ATAACAACTATTCCACACCAAATGAGAGAGGAGACCACAATAGAACACTGGATCGATCGGGGGATCTAGGCGACATGGAGCCATTGAAGGGAACAACACCCTTGATG
Seq A exon
GTAAATTCTCTTTATATACTGCTATCTGTCTAAGGCTAGTTCTATTTTGAAGCCTATGTGTTTTGTGAAACACAAAAAAAAGTACAGAGAAAGATCGCATCCTTTTCTGGTAGGGGTTTTCAGGAAAAAGTAAGAGTTCTGACTCATGTTGGGATTTCTTGGGCCGTTATTCTGCAGTGGTCAAAATGGGGGAAGCATGTCTGTAAAAGTGTTACTGATATGACTAACACTAACTGATCTACTTTCAAACATTACCTTTTTCCTCTCCCTCCCTGTTTATGAATGTTTTGCCCTTCTCTTACTATTATATCTTGTTTTGTTTGAGTTTACAAATTTTCAGAGTTTCCCTAGCTCTGGCACACACTCATGAGGTTCCTGTCTCTACTCATACTAACAAATTGCATGTGTTCACAGCAGGACGAGGGGCAGGAATCTCTGGAGGAAGAGTTGGATGTGTTGGTTTTGGATGATGAGGGGGGCCAAGTGTCTTACCCCTCCATGGTATGTCCTTCAGTCACCCCCAAGATTGTTCTTGAGGAAGGAGGCTCCTGAGTGCCAGCAACTTGTCAATCACGCTAATCTGATCAGGCCAGAGACTAAGTAGTCTCAGCCACATGGGGCTCGAGGGGTTCTGCTTTTGTGATTATTACCTCTTACGAGTCTGGGACATGCAGCTGGTGATCTGATTCTCCGTTATGTGCTGCTTTCCTTTCTCCAGATTTGCTCAACTTTTTTGGGGGGGGTCTCCTTAATCCCAACCCCATTAACATTCTCTCTTTCTCTTTTTTCTCCACAGCAG
Seq C2 exon
AAGATTTAGCACCACTATCTCCGTTCCATCTGGGCTTATATGTACTTTTATTTTTTGGTGGTGAAATTGACTGATGATTTTCCTTTTTCTTCGCTGGACTATTGTGCCAACTGCCAGGCTGCCTCCTGCCCTTACAGCCCTAAGTGGCTGCCTTCTTTCCATCAACTCCCAACTTCTTCCTGTGAAGTTTAATTGTCTCAACGCCTCCCCCTCCCCCATTCCCTCCATTTTTCTCCCAAGAAACCTGACTCAATTATTTGCATATTTTGAGAAACTGCTGCAGATTAGTTCTTTTTGCCAGTTTTCCCTGGAACTCCTGGCCTTTTGTGGAGGGGAGGGATGGAGAGAATAGGAATCTTCACTAGAAGCCGTGGGAAGAATTGGAAGTTACATGCTGTATATGCAATGTCCAGCAGTCTGATAAACTGACGATTCTTAATCAAGATTTTTTTCCTGATGGGGAAGGGACTTTTATTTTCTTTTAGAGAGGGGAAAGTGTGAGCTCTTCCCTTATTCCTAATGGCTATTTTTGAAGCAAAGAAGGCCAGCAACATTGGCACATGCCACCTGGCAAAGGACCCTTGAGTAAGTGAAGGTCTCCTAAAACTGGGATTAAGAAACCTTGCTCTCCTCATCTCCAAGGCAGGGACCATCAAGAACCTACAGACTCCATCTCTTCTGCAAGCCTCATGCCAACCCTGGGCTATTGCTGCTGCCCCTTAAACACAGGCTGTCCTTAACCCACCTCTCCTGCCCTGTGATATGTCTGCTGAGTTGGCCTGGCCATTTCCAAGAGGCTGTAGAAAGGGGAGAATGTCAAGGAAGACTTTTGGTAGAGAAGGAGCAGAAAGATGTGTTTTTGGGAAGAAGAAGACCTCTAGGAGGAGCTAGTAGGAATGTACATGAAGCAATTAGTCTGAAACTGGCTTCCCCACTCCCCCGTTTCTCCTTTTCCTATCCTTATAGGCCTGTCCCTTGCCTCTGCCCTGGATTGGTTGGCAAACTAAAGGACTTGATGTACATAACTCCTGTCCCTTTTCCCTTACAAGGTGGGGATTGCCCCTGGCTTTGCCTCTTCTTTGTGCCTTTGGCCTGGGGTGCATCTCCTCCCGCCCTTCCATGTGCCTTTCTTTGCCTCTGCAGTCTCATTTCTCATAATTTTGCAAATTATATTTTGTTGCTTTCTTACCTACTATTGGCCCTAAATAGCAGAAAGAAGAGAAGTGACCGAGAGAACCTCAGATTCTTCATTGAGGATTGGTATAGCCATGATTTCAGTCATAGCAAGCTTTTGCTCAACAGCATATGGGTGGGATTTTGCAAAAATCCTATTCTGATGAATCTCAAAGTAAGGCTGGTAAGAGAAGTGAGTGGTGTGACTCTTACTCCTTAGGTGCCCAGAATTTACCATCATCTCTGAAGGAGTTACAGGGAAGTGGTCTCCCCAATTCTCCCCTCCCTCCAGTATTGCCCCCTCTCACTTTAGCATATATTAATTAGCAGGTTGGGCTAGAGAAATCAGCTGCTATGCGGGTTGATTATTATTATTATTTCTAATCCTTTTCCTTATTTGCCTTCTACTCCCCTTAATCTAATCTAAAAGCTCTGTTCCATGCAACTGGAGTTCCTTATCCCTCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198561:ENST00000529919:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACATGGAGCCATTGAAGGG
R:
GCCAGGAGTTCCAGGGAAAAC
Band lengths:
358-1157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development