BtaINT0045100 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002411 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:HGNC:2515]
Coordinates
chr15:82326513-82329276:+
Coord C1 exon
chr15:82326513-82326596
Coord A exon
chr15:82326597-82326857
Coord C2 exon
chr15:82326858-82329276
Length
261 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
CTCTTTTTTTTCCCCTACAGCAG
3' ss Score
11.11
Exon sequences
Seq C1 exon
CAGGACGAGGGGCAGGAGTCTCTGGAGGAGGAGTTGGATGTGTTGTTTTTGGATGAGGGGGAGCCCATGTCTTGCCCTGCCATG
Seq A exon
GTATGTCCTCGCCACCCCCAAGATGGTCCTCGAGGAACGAGGCTCTGTGTGCCAGCGGTTTGCCAATCATGCGGATCTGATTGCTCTCGGCCACGTGGGGTGTAGGGGCGCTGCTTCTGTGATTGTCACCTCTTAGGAGGCCGCTGGTGATCTGATTTTCCATTTATGCCACTTCCTTCCCTCCAGATTTGTTCCTCTGTCTTTTGGTTCTCCTTATTGCCAACCTTACTAACATGTCTTTCTCTTTTTTTTCCCCTACAG
Seq C2 exon
CAGAAGATTTAGCACCACTCTCTCCGCTACATCCGGGCTTATAATATATGTACTTTTATTTTTTGGTGGTGAAATGGACTGATGATTTTCCCTTTCTTCGCTGGACTGTTGTGCCAACTGCCAGGCTGCCTCCTGCCTTGATGGCCCTGAAGTGGCTGCCTTCTTTCCATCAACTCCCTAACTGCTTCCAGTGAAGCTTAATTGTCCCTCTTCCCCCCTCCAGACCCCTCCAGTCACTCCCGAGAAGCCTGACTCAGTTATAGACATATCTTGAGAAACTGCTGCAGATTAGCTCTTTTTGCCAGCTCTCCCTGGAACTCTTGGCCTTGGTGGAGGGAGGGAGAGAGTGGGAACCTTCACTGGAAACCTTGGAAAGAACCGGAAGTTACATGCTATACATGCCGTGTCCAGCAATCTGATAAACTGATGATTCTTAATCAAGATTTTTCTTTTCCTGGTGGGGAAGGGACTTTTTTTTTTTTTTTTTTTTGAGAATGGAAAGTGTGAGCTCTTCTTTTATTCCTAATGACTATTTTTGAAGCAAAGAAGGCCGGCAACATTGGCACATCCCACTTGGCAAGGGCCCTTGACTAAGTGAAGGTTTCCTAGAGCGGAGAGTAAGAGACCTTGCCCTGATCCTCTGTGGGGCGGGACCACCCAAGGACCTGCACCCCAAATCTCTTTCCCAAGCCTCCTGCCAACCCCGGCTGCCACGTCTGCCCCCCTGAGGCTGTCCCGAACCCTCCTCCCCCAGTCCGTGGTAATGTCTGCTGACTCGGCCTGGCTGTTTGCAAGAGGCTGTAGAAAGAGGAGAACGTGTCAAGGAAGACTTTTTTGGGTGCAAAGGAGCAGAAGGATGTCTTCGGGGAGGAGAAGAGCCTCTGGGAGGAGCTAGTAGGAATGTACATGTTTCACTTAGTCCGAAACTGGCAGGAAGCTTCCCAGCTGGCTCCCCCTGCCCTGCTGTCTCCTGTCCTCACCCCTGCAGCCCCGTCCTGCCCCCGCCCCACCCTGGACTGGCTGGCTGACTAAAGGACTTGATGTACATACTCCTGCCCCCTCTACCCTGAAAAGGTGGGGTTTGCCCCTGGCTCTGCCTCGTCTTTGTGCCTTTGGCCTGGGGTGCATCTCCTCCTTCCCTTCCATGTGCCTTTCTTTGCCTCTGCAGTCTCATTTCTCATGATTTTGCAAATTATACTTTGTTGCTTTTTGACCTACTGTTGGCCCCAAATAGCAGAAAGAAGAGAAGGGACCTAGAGACCCTCTGTCTCTCCACTGGGAATTGGAACAGCCTCTGACTTCAGCCATAGAAGGTTTTTGCTCAACTGTATATGTTGGGGTTTTGCAAAAGTCCTGTTCTGATGAGTCTCCAGATGAGGTTGGTTGCCCAGGATCACCATCACCTCTGAAGGGGTGACAGGGAAGGCGTGTCCATCCCCGCCTCCCGCCCCGCCCTGCCTGCCCCGCCCCTTCCCTCCTCCTGTTAGTGTATATTTGCAGGTTGGGCTAGAGGAATCGGCTGCTATGCGGTTGATTTTTTTTTTTTTTAAACCCTGTCCCTTATTTACTTTTTACTCCTCCCCTCAATCTAAAAGCGCTGTTCAAATGCAACTGGAAATCTTTATTCTCCTCCCTCCCCCTTCCCTAATATATTGAGGCTTTGGGGTAGGAGAAAAGTGCACAACCCACCCCCCAACCCCCCTTCTCCTATGCATTAAAGTTCCTTATTTACCCCTTTGCCTCCTCACATTGCTTCCCACTCCTTTTCTGGCAAAAAGGAGCCTCTTCCTCTCTGACTAAGCGTACTGCACAGGGGAGACGGCCCGTCCAGCCCTGGCTCCACTCTTGGTTTCTCTCGTCTTTTTCTGCTCTTTTCCTGGTGCTCTTTTTGTCGGTGGGGTGTGGGTAATAGAACAGCCATAGGCTTTTGGGGACCTTTAACTGTTATTTTCATTTATTAAAACACTAAACATTCAATTTCAGAGAACCAAAAATCCCAGCTTCCCACCGAACACTGAGGGGCGTGTCTTCTGCGCCAGGCCTTTCCTGTTTTTCTTTCTCTCTTGTTAATGCTTTAAAAACAAATGAGTTTTTATACAAATAAAGTTTTTAAAGTGTGTATGTGGGGGGTCTGTGTCATTTCTTCACTTTAAGCTTGTATCTCTTCTCTCCTTTTCATCTCGATTACTTCATTATATATCAGTGTCCTTTTTCTCTCCAGAGCACCCAGAAGGGGATTGTACCAGCATGGATTAATTTTGAGCCCAATGCCAGCTCTTAACAAGGAACATTCTTTTAATTATATATGAAACACTTTTCCTCCGAAGATTCTTAAAAATCAAATGTAGAGCATGGGAAGCTTATTGCTTAACTTAGATAGGAAACTGAAGTATAAAGAATTAATAAATTTCTTAGTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002411:ENSBTAT00000043778:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTTGGATGAGGGGGAGCC
R:
AACTGAGTCAGGCTTCTCGGG
Band lengths:
299-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development