GgaINT0052797 @ galGal3
Intron Retention
Gene
ENSGALG00000007330 | Q5ZJ21_CHICK
Description
NA
Coordinates
chr5:18129474-18130416:-
Coord C1 exon
chr5:18130319-18130416
Coord A exon
chr5:18129929-18130318
Coord C2 exon
chr5:18129474-18129928
Length
390 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CTTCCCCTTTCTCTCCACAGCAG
3' ss Score
12.5
Exon sequences
Seq C1 exon
ACAACTATTCCACACTTAATGAGATGGACCACAGCAGGACACTGGACCGATCTGGTGATCTTGGAGACACGGAGCCAGTGAAGGCAGCACCATTGATG
Seq A exon
GTGAGCAGCTTTTCTTAATGAAGCTTTAAGTGGGCAGAGGCGCGGGGAATGACACTGGGAGAACTGGGCTCCTGTGACTAACCCCCGCCTGCGCCTTCGCCCCTACTAACCCCGTGTGTCTGCAGCAGGAGGAGGGGCAGGAATCCCAGCCTGAGGCAGAGGAAGATTCTGCTGTGTTTTCCCCCGCGTCGGTATGTCCTGCAGCACCCTGTCCAATCTGAATAGCGGTGGCAAATCGTGCTGTGCTGTTAGGGGTGCTTTGGGCAGCCAAATCGTGCTCTGATCGCTGCTGTCTGCAATCACTGTCTGATCCACGGGGGCCGTAAACACATCTTCACTGATTGTTCCTGCTCTGGATGTGCTAACACGTCTTCCCCTTTCTCTCCACAG
Seq C2 exon
CAGAAGATCTAGCTGCACTCCCTGCCTCCACTCAATTTGGTTGATAATATATTTTATATATTATAAATATATATAACTCTTCGTGGTGGAATGGACCGAATTTTTTTCAACCTGCTTTTTTTTTTTGCTGGACTGTTTGTGCCAACTAGCCAGCCAAATGACTGGGCCTGGTCCCACAGGAGGCAGCCCAGGCTGCTCTGCCTCCTCTCGGTGGCTGCACCTCCCTGTTCTGGGACAACTATCAATAACTCTTCCTCCCTGTCCTCCACCACTTCCCTTCCTTCAAAGAGGAGGCCCTCCTGCCTGACTGCCTGCGCCAACTGGCAAGGATGCTGCAAAACAATTCCAGACCTCTGCCTTGACCAGGAACTGCCTTCTGCCTCGCCTTCCTTCTGCTTGGAGTCTACTGCAGGGACAGGGACCGAAGGCCTTACTTGCCACCTTCCTTTGTTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007330:ENSGALT00000011857:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGATGGACCACAGCAGGA
R:
GTGGAGGACAGGGAGGAAGAG
Band lengths:
349-739
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]