DreALTD0006233-3/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000056587 | cyp2r1
Description
cytochrome P450, family 2, subfamily R, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-110114-1]
Coordinates
chr7:27221155-27332056:+
Coord C1 exon
chr7:27221155-27221228
Coord A exon
chr7:27221229-27221249
Coord C2 exon
chr7:27331983-27332056
Length
21 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GTTTTTTTGTATTTTTTTAGGAC
3' ss Score
11.33
Exon sequences
Seq C1 exon
GTGTGTGAGTGGAACAATCAGGAAATGAAGAGACGAAGGAACCAGGAGATGAGGAAACAACAACAAAGATCCAG
Seq A exon
GTAGATTCAGAAATGGGTCAG
Seq C2 exon
GACAGTGCTTGACATGGGAACTGATGGAAGAGAGAAGGGAGCAGACAAGGACGATCTGTCAGGACTCAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056587-2-7,3-7,4-7-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.353
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(6.6=88.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGACGAAGGAACCAGGA
R:
ATCGTCCTTGTCTGCTCCCTT
Band lengths:
104-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]