DreEX0025461 @ danRer10
Exon Skipping
Gene
ENSDARG00000056587 | cyp2r1
Description
cytochrome P450, family 2, subfamily R, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-110114-1]
Coordinates
chr7:27221155-27422078:+
Coord C1 exon
chr7:27221155-27221228
Coord A exon
chr7:27331983-27332056
Coord C2 exon
chr7:27421937-27422078
Length
74 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTGTATTTTTTTAGGAC
3' ss Score
11.33
5' ss Seq
GAGGTTAAA
5' ss Score
0.16
Exon sequences
Seq C1 exon
GTGTGTGAGTGGAACAATCAGGAAATGAAGAGACGAAGGAACCAGGAGATGAGGAAACAACAACAAAGATCCAG
Seq A exon
GACAGTGCTTGACATGGGAACTGATGGAAGAGAGAAGGGAGCAGACAAGGACGATCTGTCAGGACTCAAATGAG
Seq C2 exon
ATTTTCAGTCTAGACCTGGGAGGAATCCCGACTGTGATTCTAAATGGTTATGATGCCATTAAAGAGTGCCTGTATCACCAAAGTGAGGTTTTTGCAGACCGCCCGTCCCTCCCTTTATTCCAGAAGATGACAAAAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056587_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.353 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=PU(6.6=88.2)
C2:
PF0006717=p450=FE(10.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACGAAGGAACCAGGAGA
R:
TGGAATAAAGGGAGGGACGGG
Band lengths:
168-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]