DreALTD0006529-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7717875-7720448:+
Coord C1 exon
chr25:7717875-7718068
Coord A exon
chr25:7718069-7718074
Coord C2 exon
chr25:7720348-7720448
Length
6 bp
Sequences
Splice sites
5' ss Seq
TGAGTCAGT
5' ss Score
-2.15
3' ss Seq
CTTTCTCTTTATTAATGTAGTCA
3' ss Score
5.29
Exon sequences
Seq C1 exon
GCAACTCTTCAGGTTGGAGGACATGGCGAGAGGCTTCATCAGTGTAAGGAGGTGACCCTGACTACTTTTAAGCCCATTCCTGTACAGGTGGATGGGGAACCCTGTAGACTGGCTCCATCCGTCATACACATCACTCGAAGGAACCAAGCCAACATGCTGCAGAAAACCAAGAGGAGGATCTCTCTACCACAACT
Seq A exon
GTATGA
Seq C2 exon
TCAGCAGCCCATCGCAGAGACAGTGCAGATCCAAGTGAACCGTATCAGTATGCATGATTATGAAGCTCTCCATTATGATAAGGAGCAGCTCAAAGAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025-21-27,22-27-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PD(20.9=49.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCGAAGGAACCAAGCCAAC
R:
ACGGTTCACTTGGATCTGCAC
Band lengths:
105-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]