DreALTD0007158-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000068157 | ehmt1a
Description
euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
Coordinates
chr5:28899105-28900222:-
Coord C1 exon
chr5:28900166-28900222
Coord A exon
chr5:28900118-28900165
Coord C2 exon
chr5:28899105-28899259
Length
48 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGG
5' ss Score
3.93
3' ss Seq
TGCTGTGTTGTTGTGTTCAGGAG
3' ss Score
9.28
Exon sequences
Seq C1 exon
GATGATGGCGGATGGGCTCCTCTCACCTGGGCCACAGAGAACATGCGTCTGGAGCAG
Seq A exon
GTGAAGATGCTGATTTCAGCAGGAGCTGATGTCCAAATAAGAGATAAG
Seq C2 exon
GAGGAGAATTTGTGCCTCCACTGGGCTGCTTTCTCTGGCTGTGATGAAATCGCTCAGCTGCTGCTGGACCACAGATCTGACCTGCACGCGGTGAACGTCCATGGAGACACTCCTCTTCACATCGCTGTCAGACAGAACCAACTGGACTGCGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068157-20-22,21-22-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(45.8=94.3)
A:
NA
C2:
PF127962=Ank_2=PU(54.1=88.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGAGAACATGCGTCTGG
R:
GTGTCTCCATGGACGTTCACC
Band lengths:
136-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]