MmuALTD1023378-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24806214-24813631:-
Coord C1 exon
chr2:24813527-24813631
Coord A exon
NA
Coord C2 exon
chr2:24806214-24806368
Length
0 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
CTCATTTTATCTCTGTGCAGGAG
3' ss Score
9.13
Exon sequences
Seq C1 exon
GATGACGGTGGATGGACACCTATGATCTGGGCCACTGAGTACAAGCACGTGGAGCTGGTGAAGCTGCTGCTGTCTAAGGGCTCTGACATCAACATCCGGGACAAC
Seq A exon
NA
Seq C2 exon
GAGGAGAACATTTGTCTGCACTGGGCAGCATTTTCAGGCTGTGTGGACATAGCTGAAATACTTCTGGCTGCCAAGTGTGACCTGCATGCTGTGAATATCCATGGAGACTCACCCCTGCACATCGCAGCCAGGGAGAATCGCTACGACTGTGTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893-50-49,51-49-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(35.1=94.3)
A:
NA
C2:
PF127962=Ank_2=PU(51.1=90.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACCTATGATCTGGGCCA
R:
ACAGTCGTAGCGATTCTCCCT
Band lengths:
242-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types