DreALTD0007429-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000061108 | ep300b
Description
E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
Coordinates
chr3:24899866-24900314:-
Coord C1 exon
chr3:24900237-24900314
Coord A exon
NA
Coord C2 exon
chr3:24899866-24899954
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGC
5' ss Score
6.73
3' ss Seq
TTGTAATTGCTTTCATCCAGGTA
3' ss Score
8.27
Exon sequences
Seq C1 exon
ATGGTCCTCATTCAGATCCGTCTTTAGTTCAAGCCACTGGTCCCAGTCAGATGGTCAATCGCATGCAGAATCCTGCTG
Seq A exon
NA
Seq C2 exon
GTATGAATCAATTTGGCCAGGTGGGGATGCAGCAACCAATGGGACAGAGGGCCACGCCTCCCCTGCCAATGGGTGCAAACCTCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061108-10-14,11-14-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTTCAAGCCACTGGTCCCA
R:
CCTCTGTCCCATTGGTTGCTG
Band lengths:
104-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]