DreINT0063357 @ danRer10
Intron Retention
Gene
ENSDARG00000061108 | ep300b
Description
E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
Coordinates
chr3:24899866-24900314:-
Coord C1 exon
chr3:24900237-24900314
Coord A exon
chr3:24899955-24900236
Coord C2 exon
chr3:24899866-24899954
Length
282 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGC
5' ss Score
6.73
3' ss Seq
TTGTAATTGCTTTCATCCAGGTA
3' ss Score
8.27
Exon sequences
Seq C1 exon
ATGGTCCTCATTCAGATCCGTCTTTAGTTCAAGCCACTGGTCCCAGTCAGATGGTCAATCGCATGCAGAATCCTGCTG
Seq A exon
GTATGCCACACTCACTAAATGGTCTGTAGTTGATGCACTATTGCTACATATATATGAAGGGTTTATGTGCAAAGACAGATTAGTCCATTTTTAGACATCATGTTTTGTACAATTGCCAAAAAAGAAATCATATTTTCACCTTGAGTGTTAAAGAGTACATTTGCAAAAAAAACTCATATATAACTGTTGATTTATCTGTTTTTATATGAACTCTTCATATATATAAAAGTCATAGTTTTGTTTTTGACTTATGTTTTAAACTTTGTAATTGCTTTCATCCAG
Seq C2 exon
GTATGAATCAATTTGGCCAGGTGGGGATGCAGCAACCAATGGGACAGAGGGCCACGCCTCCCCTGCCAATGGGTGCAAACCTCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061108:ENSDART00000156459:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCTCATTCAGATCCGTCT
R:
GATTGAGGTTTGCACCCATTGG
Band lengths:
164-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]