BtaINT0056584 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016198 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr5:112838364-112838989:+
Coord C1 exon
chr5:112838364-112838441
Coord A exon
chr5:112838442-112838879
Coord C2 exon
chr5:112838880-112838989
Length
438 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
AGTATTTGTACTGATTACAGGTT
3' ss Score
3.31
Exon sequences
Seq C1 exon
ATGGCCCTCTCCCTGATCCATCTATGATCCGCGGCAGTGTGCCAAACCAGATGATGCCTCGGGTAACTCCACAGCCTG
Seq A exon
GTAAGGTTTTTGTTTTTTAACAGAATTCCTAGTGTATTACAAGCTTAAAATTGTCACCTTGATTCCTGCTGCCACTCAGCAGCAGGTATCACGATTGTCTACTTGAGAAATCAGAAAGCCTTTTAGATTAGGAGCCCAGGGAGGGGGGAAATGTGAAGAGCAGGTTGACTGGCAGGTGTAGGAGCACAAGGTACAAACGATCACGCATTCATTCAAAAACAACTAGCCAAGATGAGGTTTATTCCATCCAAATTTGGTTGAGACCATACATTAATTAACAGTGCCTTTCTGTAGCTGTTGGGAATGAAACAGAGATTCTTTCACAGTTGGAAGCAGGTTCCTTTATTTGTCCTGATAAAATGACATAGAATTGTAAAGAAGAACTCTCTTATTCTCCAGTCACACGGTGTTCAGGTTTAGTATTTGTACTGATTACAG
Seq C2 exon
GTTTGAATCAGTTTGGCCAGATGAGTATGCCTCAGCCCCCTATTGGACCCCGGCAAAACTCTCCTCTTCAGCACCATGTACAGTTAGCTCAAACTGGAACACTTAACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016198:ENSBTAT00000021556:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTCTCCCTGATCCATCTA
R:
GGGTTAAGTGTTCCAGTTTGAGC
Band lengths:
184-622
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]