DreINT0063327 @ danRer10
Intron Retention
Gene
ENSDARG00000100666 | ep300a
Description
E1A binding protein p300 a [Source:ZFIN;Acc:ZDB-GENE-080403-16]
Coordinates
chr12:18824189-18824721:-
Coord C1 exon
chr12:18824644-18824721
Coord A exon
chr12:18824260-18824643
Coord C2 exon
chr12:18824189-18824259
Length
384 bp
Sequences
Splice sites
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
3' ss Seq
AACTGTTCTTTACATTGCAGGGA
3' ss Score
8.48
Exon sequences
Seq C1 exon
ATGGCCCACTATCAGATCCATCAGTAGTGCGTCCAACTGGCCCAAACCAGATGATGAACAGAATGCAGAATACTGCTG
Seq A exon
GTTTGTTTGTTTATTTTTTTTTTACAATAAGAACCATTAATCCATACTCAAGTCTTTTTTGAATGTTTTTTAAAAAAAACTAATTTTTCCCCTTAAGTCTTAAGTCATTTAAGGGAAAATTTAGAATTCAGTTAAAACTCTTTTGGGCTGGTTTGTTTTTGGACTATTTTTGTATGTATTGTATTTTGGACTTATTTATTTTTGCATGTGTCTGTGCGTAGTTTTATTTTTTAATTAATATATTCTAAATTAAATATCATTTTTTGTTATAGTATAAGTTAAAGCAGCATTCTTTTTTTCTTTAATTTTTTTTTCAGCAAGATTAAGATTTTTTAATTAATGGCTTAATTATTCTTAAATTATTAACTGTTCTTTACATTGCAG
Seq C2 exon
GGATGAATTCATTTGGGAATCATATGGGAATGCAGTCCATGGGCCAGAGATCAACACCACCTCTTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100666:ENSDART00000172574:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.903 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]