GgaINT0114270 @ galGal3
Intron Retention
Gene
ENSGALG00000011992 | EP300
Description
NA
Coordinates
chr1:51690328-51691394:-
Coord C1 exon
chr1:51691317-51691394
Coord A exon
chr1:51690438-51691316
Coord C2 exon
chr1:51690328-51690437
Length
879 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TTTTTGGCATAAATGCACAGGAA
3' ss Score
3.49
Exon sequences
Seq C1 exon
ATGGTCCTATAACTGACCCAACACTGATACGTGCGAATGTGCCAAACCAGATGATGAATCGCATGCAGGCACAGCCAG
Seq A exon
GTAAATTTTATAAGAAAATTTGCTGTGATGGTGAAAGAATCTTGGAATTAGGCGGTTCTTTCTGAAGTGTTGTAGCCTTTGTTTCACCTGCTATTTTCCCATTTGACCTGTGCAGCCTGCTGTAGGGGACCTGCTTTGCAGAGGGGTTGGACTCGATGATCTCTTGAGGTCCCTTCCAACCCCTACAATTCTGTGATTGTGTGACCAAGAAAATAGATCTGTACTTTATATACGTGTGTGTGTGTATAGATATATTTGTGTGTGTTTCTATGCACAATATTGTTTCATTTTCTTGGAAGTGTTAGCTGCTTGCTTTGTTAAATGAGCAACTTAATTTTTTTTATTATTATTTTTAAGTTTCTGTGTGAACATGAGATGGTTGACCCAATCAGCTTAGGGTGAGGGCATGTCTTTAGCAGGGAGGATGCTGAAAATTGCTGCTCTGGCGTAGAACCTTGATTGCATTTTCAAGAAGCATTGCAGCCAATATTAAAAAAACAAAACAAAACAAAACAAAAAAACACTTAAATGAAGATTTACAGTCAGGATTTCCAAGAAATGAACTTCTAATAATTAAGATAATGTGAACTATCACAAATTGTATGTGGGAACAAGTCTTTCAGGGGAAAAAAGCCAGTATGTATTCTGAAGTAGCTTGGATGCTTAGTACTCAGAATTGTTCTGTTAACTGACTGACAGACATTTCCATTACATGCTTTCCATTGCATGCTTGAAAATTTTTTCATTTAAAAAAAAAAAAGAGAAGAAACTAACAGCATTCTCCAAATGTTGAATGGTGCCCAAAGGAGAATTCGGGCCTCTGTTCATAAGTGTTTTTTTGTTGTTGTTTGCTTGTTTGTTTTTGGCATAAATGCACAG
Seq C2 exon
GAATGAATCAGTTTGGCCACATGAACATGCAGCTGTCACCGATGGGACCCCGGCAAACCCCTCCTCTTCAGCACCCTGGACAGCTAAGCCAGGCCGGGGCCATGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011992:ENSGALT00000019563:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]