MmuINT0057760 @ mm9
Intron Retention
Gene
ENSMUSG00000055024 | Ep300
Description
E1A binding protein p300 [Source:MGI Symbol;Acc:MGI:1276116]
Coordinates
chr15:81453878-81455064:+
Coord C1 exon
chr15:81453878-81453955
Coord A exon
chr15:81453956-81454954
Coord C2 exon
chr15:81454955-81455064
Length
999 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACG
5' ss Score
6.15
3' ss Seq
TTGAAATATTATATTCACAGGTT
3' ss Score
5.8
Exon sequences
Seq C1 exon
ATGGTCCTGTACCTGACCCGTCTATGATCCGTGGCAGTGTGCCGAACCACATGATGCCTCGGATGACTCCACAGCCTG
Seq A exon
GTAACGTTTGAAAATGATACATGGTTGATTTTTTTTTTTTTTTAAACATGGTTGATTTTTAAGAGTCTCTGATGTAGAACAGAATGTTGCTTGCCACCTTAATTCCTGATTTAACCCAGCAGCAAGTCTTGTAATAGTCTGCTTTGGAAATTTGAAAGTTTCTTGTAGTAGAAATCCACAAAGAGAGGGAGAATGAGAAATTGAGTTGCTGACAGGTTCAGGAGTAGAATTCAGTAAGTAAGTAAGCAAGCAAGCATCCGTTGAAAACCAACTCACTGCCAGGCATAATGGTGCTCGCCTCTAATCACAGCACTCTGGAGTCGGAGGCAGGTGGATGGCACTCTTGAGAATTCAAAGCCTATCTGATCTACATAGTAAATTTTAGACTAGGCAGAAATATATAGTGAAACCCTGCGTCAAAAATAAACTAAAATAATAATACCATTACTAATTTACTAGCTGGCAGTGAACATTTGGGAAGCAGGGTCATGTGGATGTTTATAAGTTAAAGTGTGAGTTCAGGCTAACCAGCACTACACAGTGAGACTCTCTTAAAAATTTTAAAGTAACAATTTAGCATGTTGTAAATTTTAGTTTAGAAACTATCAATAATAATCTTGCTTTGGACTAGAGAATTGGCACAAGGTTTAAGTACACTCACTGTCTGCTATTCCAGAGGAACGCCAACAGCTCACAAAGAAAAAAACTATAATAAGCCAAAAAATGCCAAGTGGTGGTGCACTCAGGAGGCAGAGACAAGCAGATCTCTGAGTTCAAGGATAGCCAGGGTTACATAGTAAGATCCTGTCCAGAAAAACAAACACATGCATACATATATATGTACATGCATACATACATACAACAAATAATATCCTTGTTTAGCTGGTGATTCAGAATATCAATATTACTTTGTTGGTCCTAAGAAAATGAGCAGAATCTCATATCAACTTATGTCTTGTTCTTAAATTCAACAAAAGTATTGAAATATTATATTCACAG
Seq C2 exon
GTTTGAATCAATTTGGGCAGATGAATATGCCACAGCCCCCTATTGGACCCCGGCAACCCTCTCCTCTTCAGCACCATGGACAATTGGCTCAGTCTGGGTCACTCAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055024-Ep300:NM_177821:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGTACCTGACCCGTCTA
R:
CGGATTGAGTGACCCAGACTG
Band lengths:
185-1184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: