DreALTD0008519-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000040907 | gcgb
Description
glucagon b [Source:ZFIN;Acc:ZDB-GENE-040712-2]
Coordinates
chr9:51734106-51738381:+
Coord C1 exon
chr9:51734106-51734145
Coord A exon
chr9:51734146-51734149
Coord C2 exon
chr9:51738226-51738381
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
CATTTTATATTTCCTTCCAGCCT
3' ss Score
8.21
Exon sequences
Seq C1 exon
AGCAGCCTGCAGATCCCCTTACAAGACACGGAGGAAAACG
Seq A exon
GCAG
Seq C2 exon
CCTTATGTCTGAAGACGTGCTATTTAATGACCCAAGAGAAGTAAACACCATGAAGAGACATTCAGAAGGCACTTTCTCAAATGACTACAGCAAATATCTGGAGACCAGGAGAGCACAAGACTTTGTTCAGTGGTTAATGAACTCTAAGAGGAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040907-1-2,2-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.132
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0012315=Hormone_2=WD(100=52.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTTACAAGACACGGAGGA
R:
GCCTTCTGAATGTCTCTTCATGGT
Band lengths:
96-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]