HsaALTD1013711-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000115263 | GCG
Description
glucagon [Source:HGNC Symbol;Acc:HGNC:4191]
Coordinates
chr2:162147353-162149180:-
Coord C1 exon
chr2:162149087-162149180
Coord A exon
NA
Coord C2 exon
chr2:162147353-162147514
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTA
5' ss Score
7.26
3' ss Seq
CCAATCACTGTTCTTCACAGATC
3' ss Score
8.25
Exon sequences
Seq C1 exon
AAATGAAAAGCATTTACTTTGTGGCTGGATTATTTGTAATGCTGGTACAAGGCAGCTGGCAACGTTCCCTTCAAGACACAGAGGAGAAATCCAG
Seq A exon
NA
Seq C2 exon
ATCATTCTCAGCTTCCCAGGCAGACCCACTCAGTGATCCTGATCAGATGAACGAGGACAAGCGCCATTCACAGGGCACATTCACCAGTGACTACAGCAAGTATCTGGACTCCAGGCGTGCCCAAGATTTTGTGCAGTGGTTGATGAATACCAAGAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115263-10-11,11-11-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=NA C2=0.455
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0012315=Hormone_2=WD(100=50.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAGCATTTACTTTGTGGCTGG
R:
TGTTCCTCTTGGTATTCATCAACCA
Band lengths:
252-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains