DreALTD0008767-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000063197 | golga2
Description
golgin A2 [Source:ZFIN;Acc:ZDB-GENE-081030-1]
Coordinates
chr5:1417557-1425288:-
Coord C1 exon
chr5:1425172-1425288
Coord A exon
NA
Coord C2 exon
chr5:1417557-1417652
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GTATGTGTGTGTTGCATCAGGAG
3' ss Score
5.82
Exon sequences
Seq C1 exon
CTGAAGGAGTTTCAGCAGAAGACGATTCCATCCACGGGAAGTGCCGGACCAAAGAAGAAGAGGAAGGTTAAAGGAGATCAGACAGACGCTCCTGCTGACCGCCGCTCTCCAGAAAAT
Seq A exon
NA
Seq C2 exon
GAGCGTGTGGATGTCTCGCAGGAGCTGGAGGAGGCCGGCGCTGAACACGTCTCTAACCCTGCTTCTGCTATTAACACTGATAACTCTGCACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063197-2-4,3-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATCAGACAGACGCTCCT
R:
GGGTTAGAGACGTGTTCAGCG
Band lengths:
104-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]