DreEX0035471 @ danRer10
Exon Skipping
Gene
ENSDARG00000063197 | golga2
Description
golgin A2 [Source:ZFIN;Acc:ZDB-GENE-081030-1]
Coordinates
chr5:1417557-1425288:-
Coord C1 exon
chr5:1425172-1425288
Coord A exon
chr5:1421968-1422051
Coord C2 exon
chr5:1417557-1417652
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCTCCTTCCCTGTAGATT
3' ss Score
12.72
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTGAAGGAGTTTCAGCAGAAGACGATTCCATCCACGGGAAGTGCCGGACCAAAGAAGAAGAGGAAGGTTAAAGGAGATCAGACAGACGCTCCTGCTGACCGCCGCTCTCCAGAAAAT
Seq A exon
ATTGAGAATATTCTCAAAGTTATGGTGTCTGACCTTAGTCTGACTAATGGAGTGTCTCAGCCTCCATTTGTCAACAGCAGTCAG
Seq C2 exon
GAGCGTGTGGATGTCTCGCAGGAGCTGGAGGAGGCCGGCGCTGAACACGTCTCTAACCCTGCTTCTGCTATTAACACTGATAACTCTGCACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063197_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.821 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGACCAAAGAAGAAGAGG
R:
GCGGTGCAGAGTTATCAGTGT
Band lengths:
169-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]