GgaEX0006703 @ galGal3
Exon Skipping
Gene
ENSGALG00000004881 | GOLGA2
Description
NA
Coordinates
chr17:5628800-5631626:+
Coord C1 exon
chr17:5628800-5628922
Coord A exon
chr17:5629256-5629336
Coord C2 exon
chr17:5631492-5631626
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTCGCCTCCTTTAGATT
3' ss Score
10.71
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTGAAGGAGTACCAGCAGAAGAACAGCCCTGGAGCCACTGCGGGAGCCAAGAAGAAACGAAAAGCTAAAGAAGGAAGTAGGCCTGAGACTCCCACAAACGATGACCGGCAGTCTCCAGAGAAC
Seq A exon
ATTCAGAACATTCTGAAGGTGCTGGTGTCAGACCTTAACCGCTCCAATGGGGTAGCCATACCCTCATTGGACAAAAGGAAG
Seq C2 exon
GCATACTTTGACAGTGATGTTGCCACTCGTAATGCTGACCAGCTTGCTGCCGATGTCCCCGTGCTATCTAACAGCAACAGCCTGCCTAGCTGTGCTTCTGTCCTGCCTGCTCCTGGGAGCACGCAGCTGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881_MULTIEX2-1/2=C1-2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=0.667 C2=0.956
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGCCAAGAAGAAACGAA
R:
GGCAGGCTGTTGCTGTTAGAT
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]