GgaEX0027588 @ galGal3
Exon Skipping
Gene
ENSGALG00000004881 | GOLGA2
Description
NA
Coordinates
chr17:5628800-5632257:+
Coord C1 exon
chr17:5628800-5628922
Coord A exon
chr17:5631492-5631626
Coord C2 exon
chr17:5632214-5632257
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGTGGTGTGTTTTGTGACAGGCA
3' ss Score
8.42
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CTGAAGGAGTACCAGCAGAAGAACAGCCCTGGAGCCACTGCGGGAGCCAAGAAGAAACGAAAAGCTAAAGAAGGAAGTAGGCCTGAGACTCCCACAAACGATGACCGGCAGTCTCCAGAGAAC
Seq A exon
GCATACTTTGACAGTGATGTTGCCACTCGTAATGCTGACCAGCTTGCTGCCGATGTCCCCGTGCTATCTAACAGCAACAGCCTGCCTAGCTGTGCTTCTGTCCTGCCTGCTCCTGGGAGCACGCAGCTGACACAG
Seq C2 exon
ATTCATGAAGCTGAGGATCGTAAAAACACTTTGGATGAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881_MULTIEX2-2/2=C1-C2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=0.956 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTACCAGCAGAAGAACAGC
R:
CTGTTCTCATCCAAAGTGTTTTTACG
Band lengths:
162-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]