BtaEX0000409 @ bosTau6
Exon Skipping
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98888935-98892444:-
Coord C1 exon
chr11:98892364-98892444
Coord A exon
chr11:98889247-98889363
Coord C2 exon
chr11:98888935-98888978
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCTGCTCTGTTCTGTGACAGGCG
3' ss Score
9.44
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
ATTCAGGACATTCTGGAGGTGCTGGTGTCCGACCTTAACCGCTCCAATGGGGTAGCGATCCCCCCATTGGACAAGTGGAAG
Seq A exon
GCGCCCAAAGACCGCGCCGCTCCTGTTACACCGTCTGCTGATGACACCGTGTCACCTGGCGGTGTCCCTTCCCCCAGTGCTAGTCCCCCCCGTGTCACTAGCATGGCATCAACTCAG
Seq C2 exon
AACCATGATGCCGACAACGGTTCTGGTCCCATTGACGAAAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317_MULTIEX2-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000015044fB82
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGACATTCTGGAGGTGCT
R:
TGCTTTCGTCAATGGGACCAG
Band lengths:
122-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development