RnoEX0039181 @ rn6
Exon Skipping
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11321154-11326337:+
Coord C1 exon
chr3:11321154-11321276
Coord A exon
chr3:11325952-11326047
Coord C2 exon
chr3:11326294-11326337
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCTGCTCTGTTCTATGACAGGTG
3' ss Score
10.64
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CTGAGAGAGTATCAGCAGAAGAACAGCCCGGGTGTCCCTGCAGGAGCAAAGAAGAAGAAAAAGATTAAAAATGGCCATAGTCCAGAGAGAACCTCTGCCAGTGATTGTCAGTCAGCAGAGAAT
Seq A exon
GTGCCCACAGACCACACTGCTCCTGCACCACCAAGTACTGCTGCTGCCACTATGTTTCTTGGTGTCGTCCCTTCCCCCGATGCTGATCTCATTCAG
Seq C2 exon
AGCCACGATGCTGGCAATTGCTCTAACCTCATGGAGGAGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=0.891 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAGAGTATCAGCAGAAGAACA
R:
CTCCATGAGGTTAGAGCAATTGC
Band lengths:
159-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]