GgaEX0027588 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF84]
Coordinates
chr17:4996738-5000195:+
Coord C1 exon
chr17:4996738-4996860
Coord A exon
chr17:4999430-4999564
Coord C2 exon
chr17:5000152-5000195
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGTGGTGTGTTTTGTGACAGGCA
3' ss Score
8.42
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CTGAAGGAGTACCAGCAGAAGAACAGCCCTGGAGCCACTGCGGGAGCCAAGAAGAAACGAAAAGCTAAAGAAGGAAGTAGGCCTGAGACTCCCACAAACGATGACCGGCAGTCTCCAGAGAAC
Seq A exon
GCATACTTTGACAGTGATGTTGCCACTCGTAATGCTGACCAGCTTGCTGCCGATGTCCCCGTGCTATCTAACAGCAACAGCCTGCCTAGCTGTGCTTCTGTCCTGCCTGCTCCTGGGAGCACGCAGCTGACACAG
Seq C2 exon
ATTCATGAAGCTGAGGATCGTAAAAACACTTTGGATGAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881_MULTIEX1-3/3=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.903 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTACCAGCAGAAGAACAGC
R:
CTGTTCTCATCCAAAGTGTTTTTACG
Band lengths:
162-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]