GgaINT1000660 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF84]
Coordinates
chr17:4996738-4997274:+
Coord C1 exon
chr17:4996738-4996860
Coord A exon
chr17:4996861-4997193
Coord C2 exon
chr17:4997194-4997274
Length
333 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGC
5' ss Score
6.06
3' ss Seq
TTCTCTTTCGCCTCCTTTAGATT
3' ss Score
10.71
Exon sequences
Seq C1 exon
CTGAAGGAGTACCAGCAGAAGAACAGCCCTGGAGCCACTGCGGGAGCCAAGAAGAAACGAAAAGCTAAAGAAGGAAGTAGGCCTGAGACTCCCACAAACGATGACCGGCAGTCTCCAGAGAAC
Seq A exon
GTGAGCGTCCCCCCCTTCCTCCCAGATAACCCCTCTGCCTCATGTGTGGGTTTCCCAGACAGCACGACTGCAGCTGGAAGAGGGTTATGCAGTGTAACGTGAGCGGCCGAGGCGCCCGTGTTAGCAGTATGTGAGTCAGGCTGTGTGCTGGAGCAGTGCTGGAGCGTCCAGAGCTGTCGTGCAACCCTGGATGAACCCCGAGCCGCCCTTCTGGGATGTGTGCTCCTCGGGAGCTGGACGAGGCCGGTTTCTTTGGCTGCCTTTGATGGAGGTTTTTCTCTCTGTCCTTTTCTGAGCCGTTTCTCTTTTCCACTTCTCTTTCGCCTCCTTTAG
Seq C2 exon
ATTCAGAACATTCTGAAGGTGCTGGTGTCAGACCTTAACCGCTCCAATGGGGTAGCCATACCCTCATTGGACAAAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881:ENSGALT00000007792:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.593
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTACCAGCAGAAGAACAGCC
R:
CTTCCTTTTGTCCAATGAGGGT
Band lengths:
198-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]