RnoINT0066263 @ rn6
Intron Retention
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11321154-11326047:+
Coord C1 exon
chr3:11321154-11321276
Coord A exon
chr3:11321277-11325951
Coord C2 exon
chr3:11325952-11326047
Length
4675 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CCTGCTCTGTTCTATGACAGGTG
3' ss Score
10.64
Exon sequences
Seq C1 exon
CTGAGAGAGTATCAGCAGAAGAACAGCCCGGGTGTCCCTGCAGGAGCAAAGAAGAAGAAAAAGATTAAAAATGGCCATAGTCCAGAGAGAACCTCTGCCAGTGATTGTCAGTCAGCAGAGAAT
Seq A exon
GTGAGTCTTGGCCAGCAGATTCCTGAGGAATGGGGTGGGGGGAGAAGGGAGAAGGCTGTGGTTCAGGTAATGTCAGGTGCTGCTAAAATTTCTGGTTTGAGGGCTGGAGCCTAGTTCAGTGGTGATGGACTAGGGCTCGCTTGCCTTGCAAGGGACCCTGGATTTTATCTCAGCACAGAAAAATAAAATCTGAGTGTGGATTCTGTCTCTCCATTGTACGATAAGTCTTAGGGCAAGTGGTTTAAAGTCTTCAGACGTCTTTTTACATATCTGTACAATAGCAACAATGTTTTAATGTGTAAGTTTATTGTGATTGTTTTCGGGTTAACTCCCCTAGTGGAGGGTCTGCTGTGGAGTTAACAGTGAGCCAACAATAGGTACTGCTTGGGTTTCTTGGTTTGGGGTAGAAACCAGAGGGAACATCATTGTTCTCAGGCTTCTGAAAAGAGCCATTAGGAAGAGATCTGTGTGTTCAGTCCATCGTTGTCATGAGCTTGCTGGGTTGCCTCAGGAAAGTCCCCACACACACTCAGTTCCTTCATCTGACAGGATGATGGTGTATTGGCTTATTGTCTTACAGATTCTCTTTAGCTGTACCTTATAGTGTACAAGTGAAGTCTTATTTGGGAGTCTGGTTTTAAGGTGGACATGGGACTGGGGCCTTTGCAGATTGCTCCATGCAATCCTGGGTCTGTGGAACAGGTCTGGTGTATGTTGAGTCGCTGCCTTGATCAGGTGTAGTCACTGCATCCCCTGGGGACTCTTGCTCACTCTGAGGGCTGCCTCTGACAAGGCAGCAGCTGGCTGCTTGGAAGGTTGGCACAGGCCTGGGTGCTGATCTGTGCTCCTGAGTATTCCATCTCCCTGACTGTTTCTCTTCTTGCCCTGACTTGCTTCCCTGTCCCTCCCTCCCCTCTCTTTCTCATCTCTTTTCTTCCCACCTGCATCCCATCTTACCCCCCTCCCCTTTTCCCTTCTCGCCTGCTGTAGATTCAGGACATTCTGAAGGTGTTGGTGTCCGACCTTAACCGTTCCAATGGGGTCTCGCTCCCCCCATTAGACAAGAGGAAGGTGAGGCAGTGCCGAGACTCCCTCTGGCTTGCTCTTCCAGCCATGCATGCCACAGAGGCCTCCCTGCTGTGGGGGACCCTCTGCCACTGGCTTACTGTGTGTTGCCTCAGTTAACCATCAGCCCCTATGTCTGCTTTTTCAACTGCTCGCTTGATTGGGTTTTTTCCTTTCCCTTTATCATTTCTCATTTAGAGAATATGAGACCCACCTTGAAAGTTAAAGCTAATTGGGGAAACAGCTTTTGGTTCAGATGAGTGAGACTAGAGTTTATGAATGCCTGGCAGGGCACTGTCAGACTGGGACAGATGGGACACAAACACACCTTCAGATCTTGCCCTCTGGGCATCCGTCTCTAAAAAGCTAGACCATTGAAGTTTGTGCTTCTTTTTTATGAACTCATTTTGATTTGAAACAGGAACATGAGGTTATGAGAAAGTAAATTTATAGTATAGTTTCTGGGATTAAGACTTTTTTTTTTTCTTTTTTTTTTTTTTTTTCGGAGGGCTGGGGACCAAACCCAGGGCCTTCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCGATTAAGACTTTTTTAAGAAACCCTCAACAGGGGTTGGGGATTTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAGAAAAGAAAAAAAAAAAAAAGAAACCCTCAACAGGCAGTGGTGGCACATGTCTGTATTCCCCAATACTCTGAAGGCATAGAGGCAGGCAGATCTCTGAGTCTAGGAGGGCGTGGCCATGTCTGGTCTACAAAGTGAGTTCTAGGATGTCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAGCAAAATGAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCTCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGAAAAAAAGAATTAAAAAAAAAAAAAAAAGAAAGAAAGAAAAGCAAAATGAAAAGAAACTGTGAAAGTGTAAAGTTAACTGACAAATAAGTGAGTGACCAGGAGAAGCTGTTCTCAGTCTCTCTGAAAACTCAGTGGGTTCCTGATAGGAAGGGCACTTCCTAAACAGTGGCAGAAGTAGATGCGCAGTCCAGGTGCAGTAGAACGTGCCTATGAGCCCAGCACTGCGGACACTGAGACGAGGATGGGAAGCCCATCCTACACAGTGAGAGCCCGTCCGGAACCAATACCAATACCAGACTAAATGCACAGGACAAGAGTTACGCGGCCTCCAGGATGTCTAATGTAGCCACAGGAAAGTTGGTTCCCAGTGGACTCAAGGCTGGAGAAGGGGCGTTTGCAGCTACTTTGACAATGAAAGATGGGTCATGATCATACACACGGAGAGCTGAGGAGCAGAGAGCTGACAGGCGGAAGGGCACTTTTCAGAGACTCAGCATCCACGTGTGACAGGACCTGTGTTCACAGGGCTTAGAGCTGGCTTCCTGGATATAACCTAGTTCTTCAGTTAACATGTTAGGGGACATCCACCAAACAAAAGGAGCAGGCTTCTGTCCAACTGAAGGGGTGGCCTGAGCCAAGGCCACATCCTGTGGGGCTGAGGATGGGCGGGGTGAGGACTCGCAGGCTGGCATTGGGCTGTTTTCAGCCAACAGAGCTGATCCTGCCAGGTGTGGTCGGCTCAGGTGCTGTGCCTCCGTGCTCAGCTCAGACGTGGCACATTGTGCGTGTGGGAGTTGGGGGCACAGAGTTGGCATTTGTTGTGCTAAGGAGTCAGTCACACAGAGCTGGGGCTTCAGTTTCCCCTTTGGGAAATACTGACCAGAGCACCTAGCCCCTCTGTTCAGGAAGTGAAGACTTTTCATGTGTTTATGAAAACTTTCTTGAACCATAACTGACTTTCTACTCCAGGGATAAAGGAAATTGGCATCTTCTGAGTAGAAATAAAACAGGAAGTTATGGAAAAATAAAAATAGTTTCTGATGGGATGGGGTATTTTGAGGAGAGTGAAAACTTTGTAAGCACTCCATGCTTAGCTCTAAGACTTAAAATTGGGGAGTTACATGGTTCCTCACAAAGCAATTGAAAGTCTCCCAACAGTGCGTGGTGTCCCATCTTTATAATCCCTGCTTTTGGGAGGCAGAGGCAGAAAGGAGGTCTCTAGTTTGAGGTCAGCCTGGGCTCTATAGCAAGTTTGAGGCAAGCATGAACTTCAGAGAGACCCTGTTTCAAAACCTAAGACAAAAACCAAAAGGTACTCAGACAAATATTTTTATCTATTTTGTGCCTCTGTGAATGTTGCCAGGCTTAGAGATGTGTGTTACTAAGATGCTACAAGGGACCCAAAGCCTAGAAGGGTCTGTTGCTGGGAATGTCACACCTCCAGACTATCTCAGGTGTGGCCAGCTGCCACTGAGTCCCTGGTCTTACCTGTTAGACTCAACTGTAGACATTGTCAAGGCAACACCTAAGTGTGATTCAGAACTGACAGTCACATGTGTTACAGGGACGTTAGTCACAGTAAACCTGAAGAGAATGAAGTTCACACTTGAGTTCTCAGACGTCCTTTCTCACTTACTCAAAGGAGGAAATTTGGTTAGCATCTCCAGAGGCTGAGACTGAAGGCTTCAGAAAGCAAGCAGCCATTTCTTTGGAGAAAGGAATGGCCACTTCCTCCCAGAGCAGCCTTGCTGGATAGGCCTGGAATTTTTGTCCCTCTCCTTTTGTCTTCCCATCCTTTGCCTATTTGGATTGTTGGACCTGAGAAGACCTCTAAGCCAGAGACATAGTCTAAGAGTGAGGCCTGAACTACCAGGCCTAGGGGTGTGCGCACACCTTTAATCTAGCACCTGGGAGGCAAAGGCAGGCACAGCTCTGTGAGTGCAAGGCCTTCCTGGTCTACAGGGTGAGTTCCAGGACAGCAAGGGCTACATAGTGAGCCCCTGTCTCAGAAAATAAAACAAACAAGTGAGGCCTGAGCCTGAGGAGGAGCTGGGTACAGCTGGTCAAGCAGATAGTTCCTGCCAGGGAAGTGGGGAGACTTCTACAAGCTGCCATATAGGAAATCCTAGGATTGGTCCCTGGCTGCTTTTCCTAGGAAGCTTACATGATCTTCTAGATACTTCAAGCCAAAGGGCAGCCATTGTTCTCTACTTTACTCAGTTGTTTCTGAATCGACAAACACAGCCAGTGCATGGGTCTGGGAGGAGGGAAGGCAGGAAAGCAAGAGGAGAGGGAGAATGGTTATGTTGACCCTGATGATGAGTCCATCCCAGGAGCAAGACCTATAGTCAGGGGCCGTTAGCTCTCTGCCTCCTGCACTTGGCACTTTGTCTACCTGCTGTGGCTGCCACAGGTCAGAGCTCCATAGGGAACTAGGTCCTTGTGTATTCAGGAAGGAGCCCCTGCAGCCCCTGCTTTGAGCTCTGGCCCTTCAGAATGCTACTAAGTAGCCTGAGACCTGGGCATGTCTTGTCTGTACCCCAGTAGCTCCCAGCATGTGCAACTGTCCTGTGCCTGCCGCTGTGCTACCCTGCTTGCCCCATCACCTCGTGTCCGTGGCATTGAGGCCCTTCTCTCCTGCATGGTCTTCTAACCATCCTGCTCTGTTCTATGACAG
Seq C2 exon
GTGCCCACAGACCACACTGCTCCTGCACCACCAAGTACTGCTGCTGCCACTATGTTTCTTGGTGTCGTCCCTTCCCCCGATGCTGATCTCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884:ENSRNOT00000016341:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=NA C2=0.891
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]